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BioLiP
Download all results in tab-seperated text for 832530 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    22201 1j10:A (2.1) BS04 GLC 3.2.1.2 GO:0000272 ... P36924 12761294
    22202 1j10:A (2.1) BS05 CA 3.2.1.2 GO:0000272 ... P36924 12761294
    22203 1j10:B (2.1) BS01 GLC 3.2.1.2 GO:0000272 ... P36924 12761294
    22204 1j10:B (2.1) BS02 GLC 3.2.1.2 GO:0000272 ... P36924 12761294
    22205 1j10:B (2.1) BS03 XYP 3.2.1.2 GO:0000272 ... P36924 12761294
    22206 1j10:B (2.1) BS04 GLC 3.2.1.2 GO:0000272 ... P36924 12761294
    22207 1j10:B (2.1) BS05 GLC 3.2.1.2 GO:0000272 ... P36924 12761294
    22208 1j10:B (2.1) BS06 CA 3.2.1.2 GO:0000272 ... P36924 12761294
    22209 1j10:C (2.1) BS01 GLC 3.2.1.2 GO:0000272 ... P36924 12761294
    22210 1j10:C (2.1) BS02 GLC 3.2.1.2 GO:0000272 ... P36924 12761294
    22211 1j10:C (2.1) BS03 GLC 3.2.1.2 GO:0000272 ... P36924 12761294
    22212 1j10:C (2.1) BS04 GLC 3.2.1.2 GO:0000272 ... P36924 12761294
    22213 1j10:C (2.1) BS05 CA 3.2.1.2 GO:0000272 ... P36924 12761294
    22214 1j10:D (2.1) BS01 GLC 3.2.1.2 GO:0000272 ... P36924 12761294
    22215 1j10:D (2.1) BS02 GLC 3.2.1.2 GO:0000272 ... P36924 12761294
    22216 1j10:D (2.1) BS03 XYP 3.2.1.2 GO:0000272 ... P36924 12761294
    22217 1j10:D (2.1) BS04 GLC 3.2.1.2 GO:0000272 ... P36924 12761294
    22218 1j10:D (2.1) BS05 GLC 3.2.1.2 GO:0000272 ... P36924 12761294
    22219 1j10:D (2.1) BS06 CA 3.2.1.2 GO:0000272 ... P36924 12761294
    22220 1j11:A (2.0) BS01 EPG 3.2.1.2 GO:0000272 ... P36924 12761294
    22221 1j11:A (2.0) BS02 CA 3.2.1.2 GO:0000272 ... P36924 12761294
    22222 1j11:B (2.0) BS01 EPG 3.2.1.2 GO:0000272 ... P36924 12761294
    22223 1j11:B (2.0) BS02 CA 3.2.1.2 GO:0000272 ... P36924 12761294
    22224 1j11:C (2.0) BS01 EPG 3.2.1.2 GO:0000272 ... P36924 12761294
    22225 1j11:C (2.0) BS02 CA 3.2.1.2 GO:0000272 ... P36924 12761294
    22226 1j11:D (2.0) BS01 EPG 3.2.1.2 GO:0000272 ... P36924 12761294
    22227 1j11:D (2.0) BS02 CA 3.2.1.2 GO:0000272 ... P36924 12761294
    22228 1j12:A (2.1) BS01 EBG 3.2.1.2 GO:0000272 ... P36924 12761294
    22229 1j12:A (2.1) BS02 CA 3.2.1.2 GO:0000272 ... P36924 12761294
    22230 1j12:B (2.1) BS01 EBG 3.2.1.2 GO:0000272 ... P36924 12761294
    22231 1j12:B (2.1) BS02 CA 3.2.1.2 GO:0000272 ... P36924 12761294
    22232 1j12:C (2.1) BS01 EBG 3.2.1.2 GO:0000272 ... P36924 12761294
    22233 1j12:C (2.1) BS02 CA 3.2.1.2 GO:0000272 ... P36924 12761294
    22234 1j12:D (2.1) BS01 EBG 3.2.1.2 GO:0000272 ... P36924 12761294
    22235 1j12:D (2.1) BS02 CA 3.2.1.2 GO:0000272 ... P36924 12761294
    22236 1j14:A (2.4) BS01 CA 3.4.21.4 GO:0004252 ... P00763 12527302
    22237 1j14:A (2.4) BS02 BEN 3.4.21.4 GO:0004252 ... P00763 12527302 MOAD: Ki=32.2uM
    PDBbind: -logKd/Ki=4.49, Ki=32.2uM
    22238 1j15:A (2.0) BS01 CA 3.4.21.4 GO:0004252 ... P00763 12527302
    22239 1j15:A (2.0) BS02 BEN 3.4.21.4 GO:0004252 ... P00763 12527302 MOAD: Ki=143uM
    PDBbind: -logKd/Ki=3.84, Ki=143uM
    22240 1j16:A (1.6) BS01 CA 3.4.21.4 GO:0004252 ... P00763 12527302
    22241 1j16:A (1.6) BS02 BEN 3.4.21.4 GO:0004252 ... P00763 12527302 MOAD: Ki=143uM
    PDBbind: -logKd/Ki=3.84, Ki=143uM
    22242 1j16:A (1.6) BS03 BEN 3.4.21.4 GO:0004252 ... P00763 12527302 MOAD: Ki=143uM
    PDBbind: -logKd/Ki=3.84, Ki=143uM
    22243 1j17:T (2.0) BS01 CA 3.4.21.4 GO:0004252 ... P00763 12527302
    22244 1j17:T (2.0) BS02 ZEN 3.4.21.4 GO:0004252 ... P00763 12527302 MOAD: Ki=6.05uM
    PDBbind: -logKd/Ki=5.22, Ki=6.05uM
    22245 1j18:A (2.0) BS01 GLC 3.2.1.2 GO:0000272 ... P36924 12741813
    22246 1j18:A (2.0) BS02 GLC 3.2.1.2 GO:0000272 ... P36924 12741813
    22247 1j18:A (2.0) BS03 GLC 3.2.1.2 GO:0000272 ... P36924 12741813
    22248 1j18:A (2.0) BS04 GLC 3.2.1.2 GO:0000272 ... P36924 12741813
    22249 1j18:A (2.0) BS05 BGC 3.2.1.2 GO:0000272 ... P36924 12741813
    22250 1j18:A (2.0) BS06 GLC 3.2.1.2 GO:0000272 ... P36924 12741813
    22251 1j18:A (2.0) BS07 BGC 3.2.1.2 GO:0000272 ... P36924 12741813
    22252 1j18:A (2.0) BS08 GLC 3.2.1.2 GO:0000272 ... P36924 12741813
    22253 1j18:A (2.0) BS09 CA 3.2.1.2 GO:0000272 ... P36924 12741813
    22254 1j19:A (2.4) BS01 peptide ? GO:0003779 ... P26043 12554651
    22255 1j1a:A (2.2) BS01 CA 3.1.1.4 GO:0004623 ... P14555 12616631
    22256 1j1a:A (2.2) BS02 CA 3.1.1.4 GO:0004623 ... P14555 12616631
    22257 1j1a:A (2.2) BS03 BHP 3.1.1.4 GO:0004623 ... P14555 12616631 MOAD: ic50=0.029uM
    PDBbind: -logKd/Ki=7.54, IC50=0.029uM
    22258 1j1a:B (2.2) BS01 CA 3.1.1.4 GO:0004623 ... P14555 12616631
    22259 1j1a:B (2.2) BS02 CA 3.1.1.4 GO:0004623 ... P14555 12616631
    22260 1j1a:B (2.2) BS03 BHP 3.1.1.4 GO:0004623 ... P14555 12616631 MOAD: ic50=0.029uM
    PDBbind: -logKd/Ki=7.54, IC50=0.029uM
    22261 1j1b:A (1.8) BS01 ANP 2.7.11.1
    2.7.11.26
    GO:0001837 ... P49841 14993667
    22262 1j1b:B (1.8) BS01 ANP 2.7.11.1
    2.7.11.26
    GO:0001837 ... P49841 14993667
    22263 1j1c:A (2.1) BS01 MG 2.7.11.1
    2.7.11.26
    GO:0001837 ... P49841 14993667
    22264 1j1c:A (2.1) BS02 ADP 2.7.11.1
    2.7.11.26
    GO:0001837 ... P49841 14993667
    22265 1j1c:B (2.1) BS01 MG 2.7.11.1
    2.7.11.26
    GO:0001837 ... P49841 14993667
    22266 1j1c:B (2.1) BS02 ADP 2.7.11.1
    2.7.11.26
    GO:0001837 ... P49841 14993667
    22267 1j1d:A (2.61) BS01 CA ? GO:0002086 ... P63316 12840750
    22268 1j1d:A (2.61) BS02 CA ? GO:0002086 ... P63316 12840750
    22269 1j1d:A (2.61) BS03 CA ? GO:0002086 ... P63316 12840750
    22270 1j1d:D (2.61) BS01 CA ? GO:0002086 ... P63316 12840750
    22271 1j1d:D (2.61) BS02 CA ? GO:0002086 ... P63316 12840750
    22272 1j1d:D (2.61) BS03 CA ? GO:0002086 ... P63316 12840750
    22273 1j1e:A (3.3) BS01 CA ? GO:0002086 ... P63316 12840750
    22274 1j1e:A (3.3) BS02 CA ? GO:0002086 ... P63316 12840750
    22275 1j1e:A (3.3) BS03 CA ? GO:0002086 ... P63316 12840750
    22276 1j1e:D (3.3) BS01 CA ? GO:0002086 ... P63316 12840750
    22277 1j1e:D (3.3) BS02 CA ? GO:0002086 ... P63316 12840750
    22278 1j1e:D (3.3) BS03 CA ? GO:0002086 ... P63316 12840750
    22279 1j1f:A (1.6) BS01 5GP 4.6.1.19 GO:0003723 ... P23540 12731868
    22280 1j1g:A (1.6) BS01 5GP 4.6.1.19 GO:0003723 ... P23540 12731868
    22281 1j1g:A (1.6) BS02 5GP 4.6.1.19 GO:0003723 ... P23540 12731868
    22282 1j1l:A (2.1) BS01 FE2 1.13.11.24 GO:0003712 ... O00625 14573596
    22283 1j1m:A (1.5) BS01 GLC 3.2.2.22 GO:0017148 ... P02879 N/A
    22284 1j1m:A (1.5) BS02 GLC 3.2.2.22 GO:0017148 ... P02879 N/A
    22285 1j1m:A (1.5) BS03 GLC 3.2.2.22 GO:0017148 ... P02879 N/A
    22286 1j1n:A (1.6) BS01 MAV ? GO:0042597 ... Q9KWT5 12486124
    22287 1j1n:A (1.6) BS02 LGU ? GO:0042597 ... Q9KWT5 12486124
    22288 1j1n:A (1.6) BS03 MAV ? GO:0042597 ... Q9KWT5 12486124
    22289 1j1n:A (1.6) BS04 BEM ? GO:0042597 ... Q9KWT5 12486124
    22290 1j1n:A (1.6) BS05 CA ? GO:0042597 ... Q9KWT5 12486124
    22291 1j1n:B (1.6) BS01 MAV ? GO:0042597 ... Q9KWT5 12486124
    22292 1j1n:B (1.6) BS02 LGU ? GO:0042597 ... Q9KWT5 12486124
    22293 1j1n:B (1.6) BS03 MAV ? GO:0042597 ... Q9KWT5 12486124
    22294 1j1n:B (1.6) BS04 BEM ? GO:0042597 ... Q9KWT5 12486124
    22295 1j1n:B (1.6) BS05 CA ? GO:0042597 ... Q9KWT5 12486124
    22296 1j1r:A (1.9) BS01 ADE 3.2.2.22 GO:0016787 ... P23339 N/A
    22297 1j1s:A (2.0) BS01 FMP 3.2.2.22 GO:0016787 ... P23339 N/A
    22298 1j1t:A (2.0) BS01 CA 4.2.2.3 GO:0046872 ... P84143 N/A
    22299 1j1u:A (1.95) BS01 rna 6.1.1.1 GO:0000166 ... Q57834 12754495
    22300 1j1u:A (1.95) BS02 TYR 6.1.1.1 GO:0000166 ... Q57834 12754495
    22301 1j1v:A (2.1) BS01 dna ? GO:0003677 ... P03004 12682358
    22302 1j1v:A (2.1) BS02 dna ? GO:0003677 ... P03004 12682358
    22303 1j1w:A (3.2) BS01 NAP 1.1.1.42 GO:0004450 ... P16100 12855708
    22304 1j1w:B (3.2) BS01 NAP 1.1.1.42 GO:0004450 ... P16100 12855708
    22305 1j1w:C (3.2) BS01 NAP 1.1.1.42 GO:0004450 ... P16100 12855708
    22306 1j1w:D (3.2) BS01 NAP 1.1.1.42 GO:0004450 ... P16100 12855708
    22307 1j1z:A (2.1) BS01 ATP 6.3.4.5 GO:0000050 ... P59846 12684518
    22308 1j1z:A (2.1) BS02 CIR 6.3.4.5 GO:0000050 ... P59846 12684518
    22309 1j1z:A (2.1) BS03 ASP 6.3.4.5 GO:0000050 ... P59846 12684518
    22310 1j1z:B (2.1) BS01 ASP 6.3.4.5 GO:0000050 ... P59846 12684518
    22311 1j1z:B (2.1) BS02 ATP 6.3.4.5 GO:0000050 ... P59846 12684518
    22312 1j1z:B (2.1) BS03 CIR 6.3.4.5 GO:0000050 ... P59846 12684518
    22313 1j1z:C (2.1) BS01 ASP 6.3.4.5 GO:0000050 ... P59846 12684518
    22314 1j1z:C (2.1) BS02 ATP 6.3.4.5 GO:0000050 ... P59846 12684518
    22315 1j1z:C (2.1) BS03 CIR 6.3.4.5 GO:0000050 ... P59846 12684518
    22316 1j1z:D (2.1) BS01 ASP 6.3.4.5 GO:0000050 ... P59846 12684518
    22317 1j1z:D (2.1) BS02 ATP 6.3.4.5 GO:0000050 ... P59846 12684518
    22318 1j1z:D (2.1) BS03 CIR 6.3.4.5 GO:0000050 ... P59846 12684518
    22319 1j20:A (2.0) BS01 AMP 6.3.4.5 GO:0000050 ... P59846 12684518
    22320 1j20:A (2.0) BS02 AS1 6.3.4.5 GO:0000050 ... P59846 12684518
    22321 1j20:B (2.0) BS01 AMP 6.3.4.5 GO:0000050 ... P59846 12684518
    22322 1j20:B (2.0) BS02 AS1 6.3.4.5 GO:0000050 ... P59846 12684518
    22323 1j20:C (2.0) BS01 AMP 6.3.4.5 GO:0000050 ... P59846 12684518
    22324 1j20:C (2.0) BS02 AS1 6.3.4.5 GO:0000050 ... P59846 12684518
    22325 1j20:D (2.0) BS01 AMP 6.3.4.5 GO:0000050 ... P59846 12684518
    22326 1j20:D (2.0) BS02 AS1 6.3.4.5 GO:0000050 ... P59846 12684518
    22327 1j21:A (2.2) BS01 ATP 6.3.4.5 GO:0000050 ... P59846 12684518
    22328 1j21:A (2.2) BS02 CIR 6.3.4.5 GO:0000050 ... P59846 12684518
    22329 1j21:B (2.2) BS01 ATP 6.3.4.5 GO:0000050 ... P59846 12684518
    22330 1j21:B (2.2) BS02 CIR 6.3.4.5 GO:0000050 ... P59846 12684518
    22331 1j21:C (2.2) BS01 ATP 6.3.4.5 GO:0000050 ... P59846 12684518
    22332 1j21:C (2.2) BS02 CIR 6.3.4.5 GO:0000050 ... P59846 12684518
    22333 1j21:D (2.2) BS01 ATP 6.3.4.5 GO:0000050 ... P59846 12684518
    22334 1j21:D (2.2) BS02 CIR 6.3.4.5 GO:0000050 ... P59846 12684518
    22335 1j24:A (1.78) BS01 CA ? GO:0003677 ... Q8TZH8 12679022
    22336 1j25:A (1.78) BS01 MN ? GO:0003677 ... Q8TZH8 12679022
    22337 1j2b:A (3.3) BS01 rna 2.4.2.48 GO:0002099 ... O58843 12732145
    22338 1j2b:A (3.3) BS02 rna 2.4.2.48 GO:0002099 ... O58843 12732145
    22339 1j2b:A (3.3) BS03 MG 2.4.2.48 GO:0002099 ... O58843 12732145
    22340 1j2b:B (3.3) BS01 rna 2.4.2.48 GO:0002099 ... O58843 12732145
    22341 1j2b:B (3.3) BS02 rna 2.4.2.48 GO:0002099 ... O58843 12732145
    22342 1j2b:B (3.3) BS03 ZN 2.4.2.48 GO:0002099 ... O58843 12732145
    22343 1j2b:B (3.3) BS04 MG 2.4.2.48 GO:0002099 ... O58843 12732145
    22344 1j2c:A (2.4) BS01 BLA 1.14.14.18 GO:0001525 ... P06762 12794075
    22345 1j2g:A (2.2) BS01 AZA 1.7.3.3
    4.1.1.97
    GO:0004846 ... Q45697 N/A
    22346 1j2g:A (2.2) BS02 AZA 1.7.3.3
    4.1.1.97
    GO:0004846 ... Q45697 N/A
    22347 1j2g:B (2.2) BS01 AZA 1.7.3.3
    4.1.1.97
    GO:0004846 ... Q45697 N/A
    22348 1j2g:B (2.2) BS02 AZA 1.7.3.3
    4.1.1.97
    GO:0004846 ... Q45697 N/A
    22349 1j2g:C (2.2) BS01 AZA 1.7.3.3
    4.1.1.97
    GO:0004846 ... Q45697 N/A
    22350 1j2g:D (2.2) BS01 AZA 1.7.3.3
    4.1.1.97
    GO:0004846 ... Q45697 N/A
    22351 1j2g:D (2.2) BS02 AZA 1.7.3.3
    4.1.1.97
    GO:0004846 ... Q45697 N/A
    22352 1j2j:A (1.6) BS01 MG 3.6.5.2 GO:0000139 ... P84078 12679809
    22353 1j2j:A (1.6) BS02 GTP 3.6.5.2 GO:0000139 ... P84078 12679809
    22354 1j2o:A (-1.00) BS01 ZN ? N/A P25801
    P70662
    12727888
    22355 1j2o:A (-1.00) BS02 ZN ? N/A P25801
    P70662
    12727888
    22356 1j2q:H (2.83) BS01 CIB 3.4.25.1 GO:0000502 ... Q9P996 12614609
    22357 1j2q:I (2.83) BS01 CIB 3.4.25.1 GO:0000502 ... Q9P996 12614609
    22358 1j2q:J (2.83) BS01 CIB 3.4.25.1 GO:0000502 ... Q9P996 12614609
    22359 1j2q:K (2.83) BS01 CIB 3.4.25.1 GO:0000502 ... Q9P996 12614609
    22360 1j2q:L (2.83) BS01 CIB 3.4.25.1 GO:0000502 ... Q9P996 12614609
    22361 1j2q:M (2.83) BS01 CIB 3.4.25.1 GO:0000502 ... Q9P996 12614609
    22362 1j2q:N (2.83) BS01 CIB 3.4.25.1 GO:0000502 ... Q9P996 12614609
    22363 1j2t:A (1.8) BS01 ZN 3.5.2.10 GO:0006601 ... P83772 15003455
    22364 1j2t:A (1.8) BS02 MN 3.5.2.10 GO:0006601 ... P83772 15003455
    22365 1j2t:B (1.8) BS01 ZN 3.5.2.10 GO:0006601 ... P83772 15003455
    22366 1j2t:B (1.8) BS02 MN 3.5.2.10 GO:0006601 ... P83772 15003455
    22367 1j2t:C (1.8) BS01 ZN 3.5.2.10 GO:0006601 ... P83772 15003455
    22368 1j2t:C (1.8) BS02 MN 3.5.2.10 GO:0006601 ... P83772 15003455
    22369 1j2t:D (1.8) BS01 ZN 3.5.2.10 GO:0006601 ... P83772 15003455
    22370 1j2t:D (1.8) BS02 MN 3.5.2.10 GO:0006601 ... P83772 15003455
    22371 1j2t:E (1.8) BS01 ZN 3.5.2.10 GO:0006601 ... P83772 15003455
    22372 1j2t:E (1.8) BS02 MN 3.5.2.10 GO:0006601 ... P83772 15003455
    22373 1j2t:F (1.8) BS01 ZN 3.5.2.10 GO:0006601 ... P83772 15003455
    22374 1j2t:F (1.8) BS02 MN 3.5.2.10 GO:0006601 ... P83772 15003455
    22375 1j2u:A (1.85) BS01 ZN 3.5.2.10 GO:0006601 ... P83772 15003455
    22376 1j2u:A (1.85) BS02 ZN 3.5.2.10 GO:0006601 ... P83772 15003455
    22377 1j2u:B (1.85) BS01 ZN 3.5.2.10 GO:0006601 ... P83772 15003455
    22378 1j2u:B (1.85) BS02 ZN 3.5.2.10 GO:0006601 ... P83772 15003455
    22379 1j2u:C (1.85) BS01 ZN 3.5.2.10 GO:0006601 ... P83772 15003455
    22380 1j2u:C (1.85) BS02 ZN 3.5.2.10 GO:0006601 ... P83772 15003455
    22381 1j2u:D (1.85) BS01 ZN 3.5.2.10 GO:0006601 ... P83772 15003455
    22382 1j2u:D (1.85) BS02 ZN 3.5.2.10 GO:0006601 ... P83772 15003455
    22383 1j2u:E (1.85) BS01 ZN 3.5.2.10 GO:0006601 ... P83772 15003455
    22384 1j2u:E (1.85) BS02 ZN 3.5.2.10 GO:0006601 ... P83772 15003455
    22385 1j2u:F (1.85) BS01 ZN 3.5.2.10 GO:0006601 ... P83772 15003455
    22386 1j2u:F (1.85) BS02 ZN 3.5.2.10 GO:0006601 ... P83772 15003455
    22387 1j2x:A (2.0) BS01 peptide ? GO:0003677 ... P35269 12591941
    22388 1j2x:A (2.0) BS02 ZN ? GO:0003677 ... P35269 12591941
    22389 1j2y:A (2.6) BS01 DQA 4.2.1.10 GO:0003855 ... Q48255 12784220
    22390 1j30:A (1.7) BS01 FE ? GO:0016491 ... F9VPE5 14529281
    22391 1j30:A (1.7) BS02 ZN ? GO:0016491 ... F9VPE5 14529281
    22392 1j30:A (1.7) BS03 OXY ? GO:0016491 ... F9VPE5 14529281
    22393 1j30:A (1.7) BS04 OXY ? GO:0016491 ... F9VPE5 14529281
    22394 1j30:B (1.7) BS01 OXY ? GO:0016491 ... F9VPE5 14529281
    22395 1j30:B (1.7) BS02 ZN ? GO:0016491 ... F9VPE5 14529281
    22396 1j30:B (1.7) BS03 FE ? GO:0016491 ... F9VPE5 14529281
    22397 1j30:B (1.7) BS04 OXY ? GO:0016491 ... F9VPE5 14529281
    22398 1j32:A (2.1) BS01 PLP 2.6.1.- GO:0003824 ... Q8RR70 N/A
    22399 1j32:B (2.1) BS01 PLP 2.6.1.- GO:0003824 ... Q8RR70 N/A
    22400 1j34:A (1.55) BS01 CA ? GO:0005509 ... Q7LZ71 12695512

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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