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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
Download all results in tab-seperated text for 832530 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    21201 1iq1:C (2.8) BS02 peptide ? GO:0005737 ... P52293 11448961
    21202 1iq3:A (-1.00) BS01 CA ? GO:0005509 ... Q8NFH8 9928989
    21203 1iq5:A (1.8) BS01 peptide ? GO:0005102 ... P0DP33 11545585
    21204 1iq5:A (1.8) BS02 CA ? GO:0005102 ... P0DP33 11545585
    21205 1iq5:A (1.8) BS03 CA ? GO:0005102 ... P0DP33 11545585
    21206 1iq5:A (1.8) BS04 CA ? GO:0005102 ... P0DP33 11545585
    21207 1iq5:A (1.8) BS05 CA ? GO:0005102 ... P0DP33 11545585
    21208 1iq7:A (2.3) BS01 SO4 ? GO:0005576 ... P02789 11466309
    21209 1iq8:A (2.2) BS01 ZN 2.4.2.48 GO:0002099 ... O58843 12054814
    21210 1iq8:A (2.2) BS02 MG 2.4.2.48 GO:0002099 ... O58843 12054814
    21211 1iq8:B (2.2) BS01 ZN 2.4.2.48 GO:0002099 ... O58843 12054814
    21212 1iq8:B (2.2) BS02 MG 2.4.2.48 GO:0002099 ... O58843 12054814
    21213 1iqc:A (1.8) BS01 CA 1.11.1.5 GO:0004130 ... P55929 11695895
    21214 1iqc:A (1.8) BS02 CA 1.11.1.5 GO:0004130 ... P55929 11695895
    21215 1iqc:A (1.8) BS03 HEC 1.11.1.5 GO:0004130 ... P55929 11695895
    21216 1iqc:A (1.8) BS04 HEC 1.11.1.5 GO:0004130 ... P55929 11695895
    21217 1iqc:B (1.8) BS01 CA 1.11.1.5 GO:0004130 ... P55929 11695895
    21218 1iqc:B (1.8) BS02 HEC 1.11.1.5 GO:0004130 ... P55929 11695895
    21219 1iqc:B (1.8) BS03 HEC 1.11.1.5 GO:0004130 ... P55929 11695895
    21220 1iqc:C (1.8) BS01 CA 1.11.1.5 GO:0004130 ... P55929 11695895
    21221 1iqc:C (1.8) BS02 HEC 1.11.1.5 GO:0004130 ... P55929 11695895
    21222 1iqc:C (1.8) BS03 HEC 1.11.1.5 GO:0004130 ... P55929 11695895
    21223 1iqc:D (1.8) BS01 CA 1.11.1.5 GO:0004130 ... P55929 11695895
    21224 1iqc:D (1.8) BS02 HEC 1.11.1.5 GO:0004130 ... P55929 11695895
    21225 1iqc:D (1.8) BS03 HEC 1.11.1.5 GO:0004130 ... P55929 11695895
    21226 1iqe:A (2.9) BS01 CA 3.4.21.6 GO:0004252 ... P00742 N/A
    21227 1iqe:A (2.9) BS02 XMB 3.4.21.6 GO:0004252 ... P00742 N/A
    21228 1iqf:A (3.2) BS01 CA 3.4.21.6 GO:0004252 ... P00742 N/A
    21229 1iqf:A (3.2) BS02 XMD 3.4.21.6 GO:0004252 ... P00742 N/A
    21230 1iqg:A (2.6) BS01 CA 3.4.21.6 GO:0004252 ... P00742 N/A
    21231 1iqg:A (2.6) BS02 XME 3.4.21.6 GO:0004252 ... P00742 N/A
    21232 1iqh:A (3.0) BS01 CA 3.4.21.6 GO:0004252 ... P00742 N/A
    21233 1iqh:A (3.0) BS02 XMF 3.4.21.6 GO:0004252 ... P00742 N/A
    21234 1iqi:A (2.9) BS01 CA 3.4.21.6 GO:0004252 ... P00742 N/A
    21235 1iqi:A (2.9) BS02 XMG 3.4.21.6 GO:0004252 ... P00742 N/A
    21236 1iqj:A (3.0) BS01 CA 3.4.21.6 GO:0004252 ... P00742 N/A
    21237 1iqj:A (3.0) BS02 XMH 3.4.21.6 GO:0004252 ... P00742 N/A
    21238 1iqk:A (3.2) BS01 CA 3.4.21.6 GO:0004252 ... P00742 N/A
    21239 1iqk:A (3.2) BS02 XMI 3.4.21.6 GO:0004252 ... P00742 N/A
    21240 1iql:A (2.7) BS01 CA 3.4.21.6 GO:0004252 ... P00742 N/A
    21241 1iql:A (2.7) BS02 XMJ 3.4.21.6 GO:0004252 ... P00742 N/A
    21242 1iqm:A (2.6) BS01 CA 3.4.21.6 GO:0004252 ... P00742 N/A
    21243 1iqm:A (2.6) BS02 XMK 3.4.21.6 GO:0004252 ... P00742 N/A
    21244 1iqn:A (2.6) BS01 CA 3.4.21.6 GO:0004252 ... P00742 N/A
    21245 1iqn:A (2.6) BS02 XMC 3.4.21.6 GO:0004252 ... P00742 N/A
    21246 1iqp:A (2.8) BS01 ADP ? GO:0003677 ... Q8U4J3 11545747
    21247 1iqp:B (2.8) BS01 ADP ? GO:0003677 ... Q8U4J3 11545747
    21248 1iqp:C (2.8) BS01 ADP ? GO:0003677 ... Q8U4J3 11545747
    21249 1iqp:E (2.8) BS01 ADP ? GO:0003677 ... Q8U4J3 11545747
    21250 1iqr:A (2.1) BS01 FAD 4.1.99.3 GO:0000166 ... P61497 11707580
    21251 1iqu:A (2.2) BS01 TDR 4.1.99.3 GO:0000166 ... P61497 11707580
    21252 1iqu:A (2.2) BS02 FAD 4.1.99.3 GO:0000166 ... P61497 11707580
    21253 1iqx:A (2.0) BS01 CO 1.4.3.21 GO:0005507 ... P46881 12537504
    21254 1iqx:B (2.0) BS01 CO 1.4.3.21 GO:0005507 ... P46881 12537504
    21255 1iqz:A (0.92) BS01 SF4 ? GO:0005506 ... P10245 11827483
    21256 1ir0:A (1.0) BS01 SF4 ? GO:0005506 ... P10245 11827483
    21257 1ir1:A (1.8) BS01 MG 4.1.1.39 GO:0000287 ... P00875 11866526
    21258 1ir1:A (1.8) BS02 CAP 4.1.1.39 GO:0000287 ... P00875 11866526
    21259 1ir1:B (1.8) BS01 MG 4.1.1.39 GO:0000287 ... P00875 11866526
    21260 1ir1:B (1.8) BS02 CAP 4.1.1.39 GO:0000287 ... P00875 11866526
    21261 1ir1:C (1.8) BS01 MG 4.1.1.39 GO:0000287 ... P00875 11866526
    21262 1ir1:C (1.8) BS02 CAP 4.1.1.39 GO:0000287 ... P00875 11866526
    21263 1ir1:D (1.8) BS01 MG 4.1.1.39 GO:0000287 ... P00875 11866526
    21264 1ir1:D (1.8) BS02 CAP 4.1.1.39 GO:0000287 ... P00875 11866526
    21265 1ir2:A (1.84) BS01 MG 4.1.1.39 GO:0000287 ... P00877 11866526
    21266 1ir2:A (1.84) BS02 CAP 4.1.1.39 GO:0000287 ... P00877 11866526
    21267 1ir2:A (1.84) BS03 CAP 4.1.1.39 GO:0000287 ... P00877 11866526
    21268 1ir2:B (1.84) BS01 MG 4.1.1.39 GO:0000287 ... P00877 11866526
    21269 1ir2:B (1.84) BS02 CAP 4.1.1.39 GO:0000287 ... P00877 11866526
    21270 1ir2:B (1.84) BS03 CAP 4.1.1.39 GO:0000287 ... P00877 11866526
    21271 1ir2:C (1.84) BS01 MG 4.1.1.39 GO:0000287 ... P00877 11866526
    21272 1ir2:C (1.84) BS02 CAP 4.1.1.39 GO:0000287 ... P00877 11866526
    21273 1ir2:C (1.84) BS03 CAP 4.1.1.39 GO:0000287 ... P00877 11866526
    21274 1ir2:D (1.84) BS01 MG 4.1.1.39 GO:0000287 ... P00877 11866526
    21275 1ir2:D (1.84) BS02 CAP 4.1.1.39 GO:0000287 ... P00877 11866526
    21276 1ir2:D (1.84) BS03 CAP 4.1.1.39 GO:0000287 ... P00877 11866526
    21277 1ir2:E (1.84) BS01 CAP 4.1.1.39 GO:0000287 ... P00877 11866526
    21278 1ir2:E (1.84) BS02 MG 4.1.1.39 GO:0000287 ... P00877 11866526
    21279 1ir2:E (1.84) BS03 CAP 4.1.1.39 GO:0000287 ... P00877 11866526
    21280 1ir2:F (1.84) BS01 CAP 4.1.1.39 GO:0000287 ... P00877 11866526
    21281 1ir2:F (1.84) BS02 MG 4.1.1.39 GO:0000287 ... P00877 11866526
    21282 1ir2:F (1.84) BS03 CAP 4.1.1.39 GO:0000287 ... P00877 11866526
    21283 1ir2:G (1.84) BS01 CAP 4.1.1.39 GO:0000287 ... P00877 11866526
    21284 1ir2:G (1.84) BS02 MG 4.1.1.39 GO:0000287 ... P00877 11866526
    21285 1ir2:G (1.84) BS03 CAP 4.1.1.39 GO:0000287 ... P00877 11866526
    21286 1ir2:H (1.84) BS01 CAP 4.1.1.39 GO:0000287 ... P00877 11866526
    21287 1ir2:H (1.84) BS02 MG 4.1.1.39 GO:0000287 ... P00877 11866526
    21288 1ir2:H (1.84) BS03 CAP 4.1.1.39 GO:0000287 ... P00877 11866526
    21289 1ir2:S (1.84) BS01 MG 4.1.1.39 GO:0000287 ... P00877 11866526
    21290 1ir2:S (1.84) BS02 CAP 4.1.1.39 GO:0000287 ... P00877 11866526
    21291 1ir2:S (1.84) BS03 CAP 4.1.1.39 GO:0000287 ... P00877 11866526
    21292 1ir2:T (1.84) BS01 MG 4.1.1.39 GO:0000287 ... P00877 11866526
    21293 1ir2:T (1.84) BS02 CAP 4.1.1.39 GO:0000287 ... P00877 11866526
    21294 1ir2:T (1.84) BS03 CAP 4.1.1.39 GO:0000287 ... P00877 11866526
    21295 1ir2:U (1.84) BS01 MG 4.1.1.39 GO:0000287 ... P00877 11866526
    21296 1ir2:U (1.84) BS02 CAP 4.1.1.39 GO:0000287 ... P00877 11866526
    21297 1ir2:U (1.84) BS03 CAP 4.1.1.39 GO:0000287 ... P00877 11866526
    21298 1ir2:V (1.84) BS01 MG 4.1.1.39 GO:0000287 ... P00877 11866526
    21299 1ir2:V (1.84) BS02 CAP 4.1.1.39 GO:0000287 ... P00877 11866526
    21300 1ir2:V (1.84) BS03 CAP 4.1.1.39 GO:0000287 ... P00877 11866526
    21301 1ir2:W (1.84) BS01 CAP 4.1.1.39 GO:0000287 ... P00877 11866526
    21302 1ir2:W (1.84) BS02 MG 4.1.1.39 GO:0000287 ... P00877 11866526
    21303 1ir2:W (1.84) BS03 CAP 4.1.1.39 GO:0000287 ... P00877 11866526
    21304 1ir2:X (1.84) BS01 CAP 4.1.1.39 GO:0000287 ... P00877 11866526
    21305 1ir2:X (1.84) BS02 MG 4.1.1.39 GO:0000287 ... P00877 11866526
    21306 1ir2:X (1.84) BS03 CAP 4.1.1.39 GO:0000287 ... P00877 11866526
    21307 1ir2:Y (1.84) BS01 CAP 4.1.1.39 GO:0000287 ... P00877 11866526
    21308 1ir2:Y (1.84) BS02 MG 4.1.1.39 GO:0000287 ... P00877 11866526
    21309 1ir2:Y (1.84) BS03 CAP 4.1.1.39 GO:0000287 ... P00877 11866526
    21310 1ir2:Z (1.84) BS01 CAP 4.1.1.39 GO:0000287 ... P00877 11866526
    21311 1ir2:Z (1.84) BS02 MG 4.1.1.39 GO:0000287 ... P00877 11866526
    21312 1ir2:Z (1.84) BS03 CAP 4.1.1.39 GO:0000287 ... P00877 11866526
    21313 1ir3:A (1.9) BS01 peptide 2.7.10.1 GO:0004672 ... P06213 9312016
    21314 1ir3:A (1.9) BS02 MG 2.7.10.1 GO:0004672 ... P06213 9312016
    21315 1ir3:A (1.9) BS03 ANP 2.7.10.1 GO:0004672 ... P06213 9312016
    21316 1ir6:A (2.9) BS01 MN 3.1.-.- GO:0003676 ... Q5SJ47 11972066
    21317 1irb:A (1.9) BS01 CA 3.1.1.4 GO:0002227 ... P00593 8810924
    21318 1irc:A (2.17) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... P02185 8204590
    21319 1irc:A (2.17) BS02 IMD 1.11.1.-
    1.7.-.-
    GO:0004601 ... P02185 8204590
    21320 1ird:A (1.25) BS01 HEM ? GO:0004601 ... P69905 N/A
    21321 1ird:B (1.25) BS01 HEM ? GO:0004601 ... P68871 N/A
    21322 1ire:A (1.8) BS01 CO 4.2.1.84 GO:0003824 ... Q7SID2 11700034
    21323 1iri:A (2.4) BS01 E4P 5.3.1.9 GO:0001701 ... P06744 12054796
    21324 1iri:B (2.4) BS01 E4P 5.3.1.9 GO:0001701 ... P06744 12054796
    21325 1iri:C (2.4) BS01 E4P 5.3.1.9 GO:0001701 ... P06744 12054796
    21326 1iri:D (2.4) BS01 E4P 5.3.1.9 GO:0001701 ... P06744 12054796
    21327 1irj:A (2.1) BS01 CA ? GO:0002523 ... P06702 11851337
    21328 1irj:A (2.1) BS02 CA ? GO:0002523 ... P06702 11851337
    21329 1irj:B (2.1) BS01 CA ? GO:0002523 ... P06702 11851337
    21330 1irj:B (2.1) BS02 CA ? GO:0002523 ... P06702 11851337
    21331 1irj:B (2.1) BS03 CPS ? GO:0002523 ... P06702 11851337
    21332 1irj:C (2.1) BS01 CA ? GO:0002523 ... P06702 11851337
    21333 1irj:C (2.1) BS02 CA ? GO:0002523 ... P06702 11851337
    21334 1irj:D (2.1) BS01 CA ? GO:0002523 ... P06702 11851337
    21335 1irj:D (2.1) BS02 CA ? GO:0002523 ... P06702 11851337
    21336 1irj:D (2.1) BS03 CPS ? GO:0002523 ... P06702 11851337
    21337 1irj:E (2.1) BS01 CPS ? GO:0002523 ... P06702 11851337
    21338 1irj:E (2.1) BS02 CA ? GO:0002523 ... P06702 11851337
    21339 1irj:E (2.1) BS03 CA ? GO:0002523 ... P06702 11851337
    21340 1irj:F (2.1) BS01 CA ? GO:0002523 ... P06702 11851337
    21341 1irj:F (2.1) BS02 CA ? GO:0002523 ... P06702 11851337
    21342 1irj:G (2.1) BS01 CA ? GO:0002523 ... P06702 11851337
    21343 1irj:G (2.1) BS02 CA ? GO:0002523 ... P06702 11851337
    21344 1irj:G (2.1) BS03 CPS ? GO:0002523 ... P06702 11851337
    21345 1irj:H (2.1) BS01 CA ? GO:0002523 ... P06702 11851337
    21346 1irj:H (2.1) BS02 CA ? GO:0002523 ... P06702 11851337
    21347 1irn:A (1.2) BS01 ZN ? GO:0005506 ... P00268 8799113
    21348 1iro:A (1.1) BS01 FE ? GO:0005506 ... P00268 8799113
    21349 1irs:A (-1.00) BS01 peptide ? GO:0005158 ... P35568 8599766
    21350 1iru:1 (2.75) BS01 MG ? GO:0005839 ... Q2TBX6 12015144
    21351 1iru:1 (2.75) BS02 MG ? GO:0005839 ... Q2TBX6 12015144
    21352 1iru:A (2.75) BS01 MG ? GO:0000502 ... Q2YDE4 12015144
    21353 1iru:B (2.75) BS01 MG ? GO:0000502 ... Q3T0Y5 12015144
    21354 1iru:C (2.75) BS01 MG ? GO:0000502 ... Q3ZCK9 12015144
    21355 1iru:D (2.75) BS01 MG ? GO:0000502 ... Q3ZBG0 12015144
    21356 1iru:G (2.75) BS01 MG ? GO:0000502 ... Q58DU5 12015144
    21357 1iru:G (2.75) BS02 MG ? GO:0000502 ... Q58DU5 12015144
    21358 1iru:I (2.75) BS01 MG 3.4.25.1 GO:0004298 ... Q2TBP0 12015144
    21359 1iru:J (2.75) BS01 MG ? GO:0000502 ... P33672 12015144
    21360 1iru:J (2.75) BS02 MG ? GO:0000502 ... P33672 12015144
    21361 1iru:K (2.75) BS01 MG ? GO:0000502 ... Q5E9K0 12015144
    21362 1iru:L (2.75) BS01 MG 3.4.25.1 GO:0004298 ... Q32KL2 12015144
    21363 1iru:M (2.75) BS01 MG ? GO:0005839 ... Q2TBX6 12015144
    21364 1iru:M (2.75) BS02 MG ? GO:0005839 ... Q2TBX6 12015144
    21365 1iru:O (2.75) BS01 MG ? GO:0000502 ... Q2YDE4 12015144
    21366 1iru:P (2.75) BS01 MG ? GO:0000502 ... Q3T0Y5 12015144
    21367 1iru:Q (2.75) BS01 MG ? GO:0000502 ... Q3ZCK9 12015144
    21368 1iru:R (2.75) BS01 MG ? GO:0000502 ... Q3ZBG0 12015144
    21369 1iru:U (2.75) BS01 MG ? GO:0000502 ... Q58DU5 12015144
    21370 1iru:U (2.75) BS02 MG ? GO:0000502 ... Q58DU5 12015144
    21371 1iru:W (2.75) BS01 MG 3.4.25.1 GO:0004298 ... Q2TBP0 12015144
    21372 1iru:X (2.75) BS01 MG ? GO:0000502 ... P33672 12015144
    21373 1iru:X (2.75) BS02 MG ? GO:0000502 ... P33672 12015144
    21374 1iru:Y (2.75) BS01 MG ? GO:0000502 ... Q5E9K0 12015144
    21375 1iru:Z (2.75) BS01 MG 3.4.25.1 GO:0004298 ... Q32KL2 12015144
    21376 1irv:A (1.9) BS01 HEM ? GO:0005515 ... P00044 8718869
    21377 1irw:A (2.0) BS01 HEM ? GO:0005515 ... P00044 8718869
    21378 1irx:A (2.6) BS01 ZN 6.1.1.6 GO:0000049 ... O57963 11887185
    21379 1irx:A (2.6) BS02 ZN 6.1.1.6 GO:0000049 ... O57963 11887185
    21380 1irx:B (2.6) BS01 ZN 6.1.1.6 GO:0000049 ... O57963 11887185
    21381 1is0:A (1.9) BS01 peptide 2.7.10.2 N/A P00524 11782172
    21382 1is0:B (1.9) BS01 peptide 2.7.10.2 N/A P00524 11782172
    21383 1is2:A (2.2) BS01 FAD 1.3.3.6 GO:0000038 ... P07872 11872165
    21384 1is2:A (2.2) BS02 FAD 1.3.3.6 GO:0000038 ... P07872 11872165
    21385 1is2:B (2.2) BS01 FAD 1.3.3.6 GO:0000038 ... P07872 11872165
    21386 1is2:B (2.2) BS02 FAD 1.3.3.6 GO:0000038 ... P07872 11872165
    21387 1is3:A (1.45) BS01 BGC ? GO:0005615 ... Q9YIC2 12206768
    21388 1is3:A (1.45) BS02 GAL ? GO:0005615 ... Q9YIC2 12206768
    21389 1is4:A (1.9) BS01 BGC ? GO:0005615 ... Q9YIC2 12206768
    21390 1is4:A (1.9) BS02 GAL ? GO:0005615 ... Q9YIC2 12206768
    21391 1is7:K (2.8) BS01 PHE ? GO:0004857 ... P70552 11818540
    21392 1is7:K (2.8) BS02 PHE ? GO:0004857 ... P70552 11818540
    21393 1is7:L (2.8) BS01 PHE ? GO:0004857 ... P70552 11818540
    21394 1is7:L (2.8) BS02 PHE ? GO:0004857 ... P70552 11818540
    21395 1is7:M (2.8) BS01 PHE ? GO:0004857 ... P70552 11818540
    21396 1is7:M (2.8) BS02 PHE ? GO:0004857 ... P70552 11818540
    21397 1is7:N (2.8) BS01 PHE ? GO:0004857 ... P70552 11818540
    21398 1is7:N (2.8) BS02 PHE ? GO:0004857 ... P70552 11818540
    21399 1is7:O (2.8) BS01 PHE ? GO:0004857 ... P70552 11818540
    21400 1is7:O (2.8) BS02 PHE ? GO:0004857 ... P70552 11818540

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218