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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 832530 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    20201 1i7a:D (2.24) BS01 PHE ? GO:0007216 ... Q9QWW1 11491285
    20202 1i7b:A (1.9) BS01 SMM 4.1.1.50 GO:0004014 ... P17707 11583147
    20203 1i7b:A (1.9) BS02 PUT 4.1.1.50 GO:0004014 ... P17707 11583147
    20204 1i7b:B (1.9) BS01 SMM 4.1.1.50 GO:0004014 ... P17707 11583147
    20205 1i7c:A (2.4) BS01 PUT 4.1.1.50 GO:0004014 ... P17707 11583147
    20206 1i7c:A (2.4) BS02 MGB 4.1.1.50 GO:0004014 ... P17707 11583147 MOAD: ic50=0.4uM
    PDBbind: -logKd/Ki=6.40, IC50=0.4uM
    20207 1i7c:B (2.4) BS01 MGB 4.1.1.50 GO:0004014 ... P17707 11583147 PDBbind: -logKd/Ki=6.40, IC50=0.4uM
    20208 1i7d:A (2.05) BS01 dna 5.6.2.1 GO:0000287 ... P14294 11429611
    20209 1i7e:A (1.95) BS01 IBS ? N/A P50586 11375483
    20210 1i7g:A (2.2) BS01 AZ2 ? GO:0003677 ... Q07869 11587644 MOAD: ic50=1uM
    PDBbind: -logKd/Ki=6.00, IC50=1.0uM
    BindingDB: EC50=820nM, Ki=1000nM
    20211 1i7g:A (2.2) BS02 CPQ ? GO:0003677 ... Q07869 11587644
    20212 1i7h:A (1.7) BS01 FES ? GO:0005515 ... P0A9R4 11551196
    20213 1i7h:B (1.7) BS01 FES ? GO:0005515 ... P0A9R4 11551196
    20214 1i7h:C (1.7) BS01 FES ? GO:0005515 ... P0A9R4 11551196
    20215 1i7i:A (2.35) BS01 AZ2 ? GO:0003677 ... P37231 11587644 PDBbind: -logKd/Ki=6.70, IC50=0.2uM
    BindingDB: EC50=704nM, Ki=18nM
    20216 1i7i:B (2.35) BS01 AZ2 ? GO:0003677 ... P37231 11587644 BindingDB: EC50=704nM, Ki=18nM
    20217 1i7l:A (2.35) BS01 ATP ? GO:0005524 ... Q63537 N/A
    20218 1i7l:B (2.35) BS01 ATP ? GO:0005524 ... Q63537 N/A
    20219 1i7m:A (2.24) BS01 PUT 4.1.1.50 GO:0004014 ... P17707 11583147
    20220 1i7m:A (2.24) BS02 CG 4.1.1.50 GO:0004014 ... P17707 11583147 MOAD: ic50=0.23nM
    PDBbind: -logKd/Ki=9.64, IC50=0.23nM
    20221 1i7m:B (2.24) BS01 CG 4.1.1.50 GO:0004014 ... P17707 11583147 PDBbind: -logKd/Ki=9.64, IC50=0.23nM
    20222 1i7m:C (2.24) BS01 PUT 4.1.1.50 GO:0004014 ... P17707 11583147
    20223 1i7m:C (2.24) BS02 CG 4.1.1.50 GO:0004014 ... P17707 11583147
    20224 1i7m:D (2.24) BS01 CG 4.1.1.50 GO:0004014 ... P17707 11583147 MOAD: ic50=0.23nM
    20225 1i7o:A (1.7) BS01 CA 4.1.1.68
    5.3.3.10    		 GO:0003824 ... P37352 N/A
    20226 1i7o:B (1.7) BS01 CA 4.1.1.68
    5.3.3.10    		 GO:0003824 ... P37352 N/A
    20227 1i7o:C (1.7) BS01 CA 4.1.1.68
    5.3.3.10    		 GO:0003824 ... P37352 N/A
    20228 1i7o:D (1.7) BS01 CA 4.1.1.68
    5.3.3.10    		 GO:0003824 ... P37352 N/A
    20229 1i7p:A (2.0) BS01 FAD 1.6.2.2 GO:0016491 ... P20070 11695905
    20230 1i7q:A (1.95) BS01 MG 4.1.3.27 GO:0000162 ... P00897 11371633
    20231 1i7q:A (1.95) BS02 PYR 4.1.3.27 GO:0000162 ... P00897 11371633
    20232 1i7q:B (1.95) BS01 GLU 4.1.3.27 GO:0000162 ... P00900 11371633
    20233 1i7q:C (1.95) BS01 MG 4.1.3.27 GO:0000162 ... P00897 11371633
    20234 1i7q:C (1.95) BS02 PYR 4.1.3.27 GO:0000162 ... P00897 11371633
    20235 1i7q:D (1.95) BS01 GLU 4.1.3.27 GO:0000162 ... P00900 11371633
    20236 1i7r:A (2.2) BS01 peptide ? N/A P04439 11584024
    20237 1i7r:D (2.2) BS01 peptide ? N/A P04439 11584024
    20238 1i7s:A (2.4) BS01 TRP 4.1.3.27 GO:0000162 ... P00897 11371633
    20239 1i7s:C (2.4) BS01 TRP 4.1.3.27 GO:0000162 ... P00897 11371633
    20240 1i7t:A (2.8) BS01 peptide ? N/A P04439 11584024
    20241 1i7t:D (2.8) BS01 peptide ? N/A P04439 11584024
    20242 1i7u:A (1.8) BS01 peptide ? N/A P04439 11584024
    20243 1i7u:D (1.8) BS01 peptide ? N/A P04439 11584024
    20244 1i7w:A (2.0) BS01 ZN ? GO:0007155 ... Q02248 11348595
    20245 1i7w:C (2.0) BS01 ZN ? GO:0007155 ... Q02248 11348595
    20246 1i7y:A (2.5) BS01 CYC ? GO:0009579 ... Q9AM02 11601847
    20247 1i7y:B (2.5) BS01 CYC ? GO:0009579 ... Q71RW8 11601847
    20248 1i7y:B (2.5) BS02 CYC ? GO:0009579 ... Q71RW8 11601847
    20249 1i7z:A (2.3) BS01 COC ? GO:0002250 ... P01834 11469854 MOAD: Kd=0.4uM
    PDBbind: -logKd/Ki=6.40, Kd=0.4uM
    20250 1i7z:B (2.3) BS01 COC ? N/A P01857 11469854 PDBbind: -logKd/Ki=6.40, Kd=0.4uM
    20251 1i7z:C (2.3) BS01 COC ? GO:0002250 ... P01834 11469854 MOAD: Kd=0.4uM
    20252 1i7z:D (2.3) BS01 COC ? N/A P01857 11469854
    20253 1i80:A (2.0) BS01 PO4 2.4.2.1 GO:0003824 ... P9WP01 11444966
    20254 1i80:A (2.0) BS02 9HX 2.4.2.1 GO:0003824 ... P9WP01 11444966 MOAD: Kd=0.39uM
    20255 1i80:A (2.0) BS03 IMR 2.4.2.1 GO:0003824 ... P9WP01 11444966
    20256 1i80:B (2.0) BS01 9HX 2.4.2.1 GO:0003824 ... P9WP01 11444966 MOAD: Kd=0.39uM
    PDBbind: -logKd/Ki=6.41, Kd=0.39uM
    20257 1i80:C (2.0) BS01 9HX 2.4.2.1 GO:0003824 ... P9WP01 11444966 MOAD: Kd=0.39uM
    PDBbind: -logKd/Ki=6.41, Kd=0.39uM
    20258 1i82:A (1.9) BS01 BGC 3.2.1.8 GO:0004553 ... Q60037 11371186
    20259 1i82:A (1.9) BS02 BGC 3.2.1.8 GO:0004553 ... Q60037 11371186
    20260 1i82:A (1.9) BS03 CA 3.2.1.8 GO:0004553 ... Q60037 11371186
    20261 1i82:A (1.9) BS04 CA 3.2.1.8 GO:0004553 ... Q60037 11371186
    20262 1i82:A (1.9) BS05 CA 3.2.1.8 GO:0004553 ... Q60037 11371186
    20263 1i83:A (2.0) BS01 ZN 1.14.13.39 GO:0004517 ... P29473 11331290
    20264 1i83:A (2.0) BS02 HEM 1.14.13.39 GO:0004517 ... P29473 11331290
    20265 1i83:A (2.0) BS03 NTU 1.14.13.39 GO:0004517 ... P29473 11331290
    20266 1i83:B (2.0) BS01 ZN 1.14.13.39 GO:0004517 ... P29473 11331290
    20267 1i83:B (2.0) BS02 HEM 1.14.13.39 GO:0004517 ... P29473 11331290
    20268 1i83:B (2.0) BS03 NTU 1.14.13.39 GO:0004517 ... P29473 11331290
    20269 1i8a:A (1.9) BS01 BGC 3.2.1.8 GO:0004553 ... Q60037 11371186
    20270 1i8a:A (1.9) BS02 CA 3.2.1.8 GO:0004553 ... Q60037 11371186
    20271 1i8a:A (1.9) BS03 CA 3.2.1.8 GO:0004553 ... Q60037 11371186
    20272 1i8a:A (1.9) BS04 CA 3.2.1.8 GO:0004553 ... Q60037 11371186
    20273 1i8g:B (-1.00) BS01 peptide 5.2.1.8 N/A Q13526 11313338
    20274 1i8h:B (-1.00) BS01 peptide 5.2.1.8 N/A Q13526 11313338
    20275 1i8i:A (2.4) BS01 peptide ? GO:0002250 ... P01660 11352579
    20276 1i8i:B (2.4) BS01 peptide ? GO:0002250 ... P18529 11352579
    20277 1i8j:A (1.9) BS01 ZN 4.2.1.24 GO:0000287 ... P0ACB2 11444968
    20278 1i8j:A (1.9) BS02 DSB 4.2.1.24 GO:0000287 ... P0ACB2 11444968 PDBbind: -logKd/Ki=4.41, IC50=39uM
    20279 1i8j:B (1.9) BS01 ZN 4.2.1.24 GO:0000287 ... P0ACB2 11444968
    20280 1i8j:B (1.9) BS02 DSB 4.2.1.24 GO:0000287 ... P0ACB2 11444968
    20281 1i8k:A (1.8) BS01 peptide ? GO:0002250 ... P01660 11352579
    20282 1i8k:B (1.8) BS01 peptide ? GO:0002250 ... P18529 11352579
    20283 1i8m:A (2.1) BS01 dna ? N/A Q7TS98 11733999 PDBbind: Kd=2700nM
    20284 1i8m:B (2.1) BS01 dna ? N/A Q924Q6 11733999 PDBbind: Kd=2700nM
    20285 1i8m:B (2.1) BS02 dna ? N/A Q924Q6 11733999 PDBbind: Kd=2700nM
    20286 1i8m:H (2.1) BS01 dna ? N/A Q924Q6 11733999 PDBbind: Kd=2700nM
    20287 1i8m:L (2.1) BS01 dna ? N/A Q7TS98 11733999 PDBbind: Kd=2700nM
    20288 1i8n:A (2.2) BS01 ROP ? GO:0005576 ... Q01747 11468390
    20289 1i8n:B (2.2) BS01 ROP ? GO:0005576 ... Q01747 11468390
    20290 1i8o:A (1.15) BS01 HEC ? GO:0009055 ... P00091 11742117
    20291 1i8p:A (1.95) BS01 HEC ? GO:0009055 ... P00091 11742117
    20292 1i8p:B (1.95) BS01 HEC ? GO:0009055 ... P00091 11742117
    20293 1i8p:C (1.95) BS01 HEC ? GO:0009055 ... P00091 11742117
    20294 1i8p:D (1.95) BS01 HEC ? GO:0009055 ... P00091 11742117
    20295 1i8q:A (2.2) BS01 GC4 4.2.2.1 GO:0003824 ... Q53591 11527972
    20296 1i8q:A (2.2) BS02 GC4 4.2.2.1 GO:0003824 ... Q53591 11527972
    20297 1i8t:A (2.4) BS01 FAD 5.4.99.9 GO:0005515 ... P37747 11573090
    20298 1i8t:B (2.4) BS01 FAD 5.4.99.9 GO:0005515 ... P37747 11573090
    20299 1i8u:A (1.9) BS01 CA 3.2.1.8 GO:0004553 ... Q60037 11371186
    20300 1i8u:A (1.9) BS02 CA 3.2.1.8 GO:0004553 ... Q60037 11371186
    20301 1i8u:A (1.9) BS03 CA 3.2.1.8 GO:0004553 ... Q60037 11371186
    20302 1i8z:A (1.93) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 11831900
    20303 1i8z:A (1.93) BS02 INL 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 11831900 MOAD: ic50=1.27nM
    PDBbind: -logKd/Ki=8.90, IC50=1.27nM
    BindingDB: Ki=0.15nM, IC50=1.3nM
    20304 1i90:A (2.0) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 11831900
    20305 1i90:A (2.0) BS02 INM 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 11831900 MOAD: ic50=1.28nM
    PDBbind: -logKd/Ki=8.89, IC50=1.28nM
    20306 1i91:A (2.0) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 11831900
    20307 1i91:A (2.0) BS02 INQ 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 11831900 MOAD: ic50=1.15nM
    PDBbind: -logKd/Ki=8.94, IC50=1.15nM
    BindingDB: Ki=0.15nM, IC50=1.2nM
    20308 1i94:B (3.2) BS01 rna ? GO:0003735 ... P80371 11296217
    20309 1i94:B (3.2) BS02 WO2 ? GO:0003735 ... P80371 11296217
    20310 1i94:B (3.2) BS03 WO2 ? GO:0003735 ... P80371 11296217
    20311 1i94:C (3.2) BS01 rna ? GO:0003676 ... P80372 11296217
    20312 1i94:C (3.2) BS02 WO2 ? GO:0003676 ... P80372 11296217
    20313 1i94:D (3.2) BS01 rna ? GO:0003723 ... P80373 11296217
    20314 1i94:D (3.2) BS02 MG ? GO:0003723 ... P80373 11296217
    20315 1i94:D (3.2) BS03 MG ? GO:0003723 ... P80373 11296217
    20316 1i94:E (3.2) BS01 rna ? GO:0003723 ... Q5SHQ5 11296217
    20317 1i94:E (3.2) BS02 MG ? GO:0003723 ... Q5SHQ5 11296217
    20318 1i94:E (3.2) BS03 WO2 ? GO:0003723 ... Q5SHQ5 11296217
    20319 1i94:F (3.2) BS01 rna ? GO:0003735 ... Q5SLP8 11296217
    20320 1i94:G (3.2) BS01 rna ? GO:0000028 ... P17291 11296217
    20321 1i94:G (3.2) BS02 WO2 ? GO:0000028 ... P17291 11296217
    20322 1i94:H (3.2) BS01 rna ? GO:0003735 ... P0DOY9 11296217
    20323 1i94:H (3.2) BS02 WO2 ? GO:0003735 ... P0DOY9 11296217
    20324 1i94:I (3.2) BS01 rna ? GO:0000049 ... P80374 11296217
    20325 1i94:J (3.2) BS01 rna ? GO:0000049 ... Q5SHN7 11296217
    20326 1i94:J (3.2) BS02 WO2 ? GO:0000049 ... Q5SHN7 11296217
    20327 1i94:K (3.2) BS01 rna ? GO:0003735 ... P80376 11296217
    20328 1i94:K (3.2) BS02 WO2 ? GO:0003735 ... P80376 11296217
    20329 1i94:L (3.2) BS01 rna ? GO:0000049 ... Q5SHN3 11296217
    20330 1i94:L (3.2) BS02 MG ? GO:0000049 ... Q5SHN3 11296217
    20331 1i94:L (3.2) BS03 MG ? GO:0000049 ... Q5SHN3 11296217
    20332 1i94:L (3.2) BS04 MG ? GO:0000049 ... Q5SHN3 11296217
    20333 1i94:M (3.2) BS01 rna ? GO:0000049 ... P80377 11296217
    20334 1i94:N (3.2) BS01 rna ? GO:0003735 ... P0DOY6 11296217
    20335 1i94:N (3.2) BS02 ZN ? GO:0003735 ... P0DOY6 11296217
    20336 1i94:O (3.2) BS01 rna ? GO:0003735 ... Q5SJ76 11296217
    20337 1i94:P (3.2) BS01 rna ? GO:0003735 ... Q5SJH3 11296217
    20338 1i94:P (3.2) BS02 MG ? GO:0003735 ... Q5SJH3 11296217
    20339 1i94:Q (3.2) BS01 rna ? GO:0003735 ... P0DOY7 11296217
    20340 1i94:Q (3.2) BS02 MG ? GO:0003735 ... P0DOY7 11296217
    20341 1i94:Q (3.2) BS03 MG ? GO:0003735 ... P0DOY7 11296217
    20342 1i94:R (3.2) BS01 rna ? GO:0003735 ... Q5SLQ0 11296217
    20343 1i94:R (3.2) BS02 WO2 ? GO:0003735 ... Q5SLQ0 11296217
    20344 1i94:S (3.2) BS01 rna ? GO:0000028 ... Q5SHP2 11296217
    20345 1i94:T (3.2) BS01 rna ? GO:0003723 ... P80380 11296217
    20346 1i94:T (3.2) BS02 MG ? GO:0003723 ... P80380 11296217
    20347 1i94:T (3.2) BS03 MG ? GO:0003723 ... P80380 11296217
    20348 1i94:T (3.2) BS04 MG ? GO:0003723 ... P80380 11296217
    20349 1i95:C (4.5) BS01 rna ? GO:0003676 ... P80372 11296217
    20350 1i95:D (4.5) BS01 rna ? GO:0003723 ... P80373 11296217
    20351 1i95:G (4.5) BS01 WO2 ? GO:0000028 ... P17291 11296217
    20352 1i95:I (4.5) BS01 rna ? GO:0000049 ... P80374 11296217
    20353 1i95:J (4.5) BS01 rna ? GO:0000049 ... Q5SHN7 11296217
    20354 1i95:K (4.5) BS01 rna ? GO:0003735 ... P80376 11296217
    20355 1i95:K (4.5) BS02 WO2 ? GO:0003735 ... P80376 11296217
    20356 1i95:L (4.5) BS01 rna ? GO:0000049 ... Q5SHN3 11296217
    20357 1i95:N (4.5) BS01 rna ? GO:0003735 ... P0DOY6 11296217
    20358 1i95:P (4.5) BS01 rna ? GO:0003735 ... Q5SJH3 11296217
    20359 1i95:Q (4.5) BS01 rna ? GO:0003735 ... P0DOY7 11296217
    20360 1i95:S (4.5) BS01 rna ? GO:0000028 ... Q5SHP2 11296217
    20361 1i95:T (4.5) BS01 rna ? GO:0003723 ... P80380 11296217
    20362 1i96:B (4.2) BS01 rna ? GO:0003735 ... P80371 11296217
    20363 1i96:C (4.2) BS01 rna ? GO:0003676 ... P80372 11296217
    20364 1i96:D (4.2) BS01 rna ? GO:0003723 ... P80373 11296217
    20365 1i96:I (4.2) BS01 rna ? GO:0000049 ... P62669 11296217
    20366 1i96:J (4.2) BS01 rna ? GO:0000049 ... Q5SHN7 11296217
    20367 1i96:K (4.2) BS01 rna ? GO:0003735 ... P80376 11296217
    20368 1i96:K (4.2) BS02 WO2 ? GO:0003735 ... P80376 11296217
    20369 1i96:L (4.2) BS01 rna ? GO:0000049 ... Q5SHN3 11296217
    20370 1i96:P (4.2) BS01 rna ? GO:0003735 ... Q5SJH3 11296217
    20371 1i96:Q (4.2) BS01 rna ? GO:0003735 ... P0DOY7 11296217
    20372 1i96:S (4.2) BS01 rna ? GO:0000028 ... Q5SHP2 11296217
    20373 1i96:T (4.2) BS01 rna ? GO:0003723 ... P80380 11296217
    20374 1i97:C (4.5) BS01 rna ? GO:0003676 ... P80372 11296217
    20375 1i97:D (4.5) BS01 rna ? GO:0003723 ... P80373 11296217
    20376 1i97:D (4.5) BS02 TAC ? GO:0003723 ... P80373 11296217
    20377 1i97:E (4.5) BS01 rna ? GO:0003723 ... Q5SHQ5 11296217
    20378 1i97:H (4.5) BS01 rna ? GO:0003735 ... P0DOY9 11296217
    20379 1i97:I (4.5) BS01 rna ? GO:0000049 ... P80374 11296217
    20380 1i97:I (4.5) BS02 TAC ? GO:0000049 ... P80374 11296217
    20381 1i97:J (4.5) BS01 rna ? GO:0000049 ... Q5SHN7 11296217
    20382 1i97:K (4.5) BS01 rna ? GO:0003735 ... P80376 11296217
    20383 1i97:K (4.5) BS02 WO2 ? GO:0003735 ... P80376 11296217
    20384 1i97:L (4.5) BS01 rna ? GO:0000049 ... Q5SHN3 11296217
    20385 1i97:M (4.5) BS01 rna ? GO:0000049 ... P80377 11296217
    20386 1i97:N (4.5) BS01 rna ? GO:0003735 ... P0DOY6 11296217
    20387 1i97:O (4.5) BS01 rna ? GO:0003735 ... Q5SJ76 11296217
    20388 1i97:P (4.5) BS01 rna ? GO:0003735 ... Q5SJH3 11296217
    20389 1i97:Q (4.5) BS01 rna ? GO:0003735 ... P0DOY7 11296217
    20390 1i97:R (4.5) BS01 WO2 ? GO:0003735 ... Q5SLQ0 11296217
    20391 1i97:T (4.5) BS01 rna ? GO:0003723 ... P80380 11296217
    20392 1i9a:A (2.5) BS01 MN 5.3.3.2 GO:0000287 ... Q46822 11698677
    20393 1i9a:B (2.5) BS01 MN 5.3.3.2 GO:0000287 ... Q46822 11698677
    20394 1i9b:A (2.7) BS01 CA ? GO:0004888 ... P58154 11357122
    20395 1i9b:A (2.7) BS02 CA ? GO:0004888 ... P58154 11357122
    20396 1i9b:B (2.7) BS01 CA ? GO:0004888 ... P58154 11357122
    20397 1i9b:C (2.7) BS01 CA ? GO:0004888 ... P58154 11357122
    20398 1i9b:D (2.7) BS01 CA ? GO:0004888 ... P58154 11357122
    20399 1i9b:E (2.7) BS01 CA ? GO:0004888 ... P58154 11357122
    20400 1i9b:E (2.7) BS02 CA ? GO:0004888 ... P58154 11357122
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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