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BioLiP
Download all results in tab-seperated text for 7 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • The sequence is converted from residues with experimentally determined coordinates in the structure; residues not observed in the 3D structure are excluded.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (resolution)     		Site
    #     		RNA
    sequence         		EC
    number     		GO
    terms     		UniProt PubMed Binding
    affinity
    1 8pj2:b
    (3.4)    		 BS03 >8pj2:w (identical to 8bsi:Lu, 8bsj:u, 8bsj:v, 8btd:u, 8btr:u, 7cpu:S6, 7cpv:S6, 6fec:N, 6hcj:33, 6hcq:33, 5k0y:N, 8k2c:CC, 4kzz:j, 7ls1:n2, 7ls2:n2, 8oz0:y, 8p03:1, 8p09:1, 8pj1:w, 8pj3:w, 8pj4:w, 8pj5:w, 8ppl:Iw, 7qp6:w, 7qp7:w, 7qvp:B5, 6qzp:S6, 7syr:i, 7sys:i, 7syv:i, 7syw:i, 7syx:i, 5t2c:An, 7tql:3, 4ug0:S6, 4v6x:BC, 8xsx:CC, 8xsz:CC, 8xsz:CD, 6y57:B4, 6yal:1, 6yam:1, 6yan:1, 6ybv:w, 6zmw:w)
    agcagaguggcgcagcggaagcgugcugggcccauaacccagaggucgau
ggaucgaaaccauccucugcuacca
<<<<<<<..<<<<.......>>>>.<<<<<.......>>>>>.....<<<
<<.......>>>>>>>>>>>>....
    		 N/A N/A P62841 N/A
    2 8pj2:e
    (3.4)    		 BS02 >8pj2:w (identical to 8bsi:Lu, 8bsj:u, 8bsj:v, 8btd:u, 8btr:u, 7cpu:S6, 7cpv:S6, 6fec:N, 6hcj:33, 6hcq:33, 5k0y:N, 8k2c:CC, 4kzz:j, 7ls1:n2, 7ls2:n2, 8oz0:y, 8p03:1, 8p09:1, 8pj1:w, 8pj3:w, 8pj4:w, 8pj5:w, 8ppl:Iw, 7qp6:w, 7qp7:w, 7qvp:B5, 6qzp:S6, 7syr:i, 7sys:i, 7syv:i, 7syw:i, 7syx:i, 5t2c:An, 7tql:3, 4ug0:S6, 4v6x:BC, 8xsx:CC, 8xsz:CC, 8xsz:CD, 6y57:B4, 6yal:1, 6yam:1, 6yan:1, 6ybv:w, 6zmw:w)
    agcagaguggcgcagcggaagcgugcugggcccauaacccagaggucgau
ggaucgaaaccauccucugcuacca
<<<<<<<..<<<<.......>>>>.<<<<<.......>>>>>.....<<<
<<.......>>>>>>>>>>>>....
    		 N/A N/A P62851 N/A
    3 8pj2:f
    (3.4)    		 BS02 >8pj2:w (identical to 8bsi:Lu, 8bsj:u, 8bsj:v, 8btd:u, 8btr:u, 7cpu:S6, 7cpv:S6, 6fec:N, 6hcj:33, 6hcq:33, 5k0y:N, 8k2c:CC, 4kzz:j, 7ls1:n2, 7ls2:n2, 8oz0:y, 8p03:1, 8p09:1, 8pj1:w, 8pj3:w, 8pj4:w, 8pj5:w, 8ppl:Iw, 7qp6:w, 7qp7:w, 7qvp:B5, 6qzp:S6, 7syr:i, 7sys:i, 7syv:i, 7syw:i, 7syx:i, 5t2c:An, 7tql:3, 4ug0:S6, 4v6x:BC, 8xsx:CC, 8xsz:CC, 8xsz:CD, 6y57:B4, 6yal:1, 6yam:1, 6yan:1, 6ybv:w, 6zmw:w)
    agcagaguggcgcagcggaagcgugcugggcccauaacccagaggucgau
ggaucgaaaccauccucugcuacca
<<<<<<<..<<<<.......>>>>.<<<<<.......>>>>>.....<<<
<<.......>>>>>>>>>>>>....
    		 N/A N/A P62269 N/A
    4 8pj2:q
    (3.4)    		 BS03 >8pj2:w (identical to 8bsi:Lu, 8bsj:u, 8bsj:v, 8btd:u, 8btr:u, 7cpu:S6, 7cpv:S6, 6fec:N, 6hcj:33, 6hcq:33, 5k0y:N, 8k2c:CC, 4kzz:j, 7ls1:n2, 7ls2:n2, 8oz0:y, 8p03:1, 8p09:1, 8pj1:w, 8pj3:w, 8pj4:w, 8pj5:w, 8ppl:Iw, 7qp6:w, 7qp7:w, 7qvp:B5, 6qzp:S6, 7syr:i, 7sys:i, 7syv:i, 7syw:i, 7syx:i, 5t2c:An, 7tql:3, 4ug0:S6, 4v6x:BC, 8xsx:CC, 8xsz:CC, 8xsz:CD, 6y57:B4, 6yal:1, 6yam:1, 6yan:1, 6ybv:w, 6zmw:w)
    agcagaguggcgcagcggaagcgugcugggcccauaacccagaggucgau
ggaucgaaaccauccucugcuacca
<<<<<<<..<<<<.......>>>>.<<<<<.......>>>>>.....<<<
<<.......>>>>>>>>>>>>....
    		 N/A N/A P47813 N/A
    5 8pj2:r
    (3.4)    		 BS02 >8pj2:w (identical to 8bsi:Lu, 8bsj:u, 8bsj:v, 8btd:u, 8btr:u, 7cpu:S6, 7cpv:S6, 6fec:N, 6hcj:33, 6hcq:33, 5k0y:N, 8k2c:CC, 4kzz:j, 7ls1:n2, 7ls2:n2, 8oz0:y, 8p03:1, 8p09:1, 8pj1:w, 8pj3:w, 8pj4:w, 8pj5:w, 8ppl:Iw, 7qp6:w, 7qp7:w, 7qvp:B5, 6qzp:S6, 7syr:i, 7sys:i, 7syv:i, 7syw:i, 7syx:i, 5t2c:An, 7tql:3, 4ug0:S6, 4v6x:BC, 8xsx:CC, 8xsz:CC, 8xsz:CD, 6y57:B4, 6yal:1, 6yam:1, 6yan:1, 6ybv:w, 6zmw:w)
    agcagaguggcgcagcggaagcgugcugggcccauaacccagaggucgau
ggaucgaaaccauccucugcuacca
<<<<<<<..<<<<.......>>>>.<<<<<.......>>>>>.....<<<
<<.......>>>>>>>>>>>>....
    		 N/A N/A P05198 N/A
    6 8pj2:t
    (3.4)    		 BS01 >8pj2:w (identical to 8bsi:Lu, 8bsj:u, 8bsj:v, 8btd:u, 8btr:u, 7cpu:S6, 7cpv:S6, 6fec:N, 6hcj:33, 6hcq:33, 5k0y:N, 8k2c:CC, 4kzz:j, 7ls1:n2, 7ls2:n2, 8oz0:y, 8p03:1, 8p09:1, 8pj1:w, 8pj3:w, 8pj4:w, 8pj5:w, 8ppl:Iw, 7qp6:w, 7qp7:w, 7qvp:B5, 6qzp:S6, 7syr:i, 7sys:i, 7syv:i, 7syw:i, 7syx:i, 5t2c:An, 7tql:3, 4ug0:S6, 4v6x:BC, 8xsx:CC, 8xsz:CC, 8xsz:CD, 6y57:B4, 6yal:1, 6yam:1, 6yan:1, 6ybv:w, 6zmw:w)
    agcagaguggcgcagcggaagcgugcugggcccauaacccagaggucgau
ggaucgaaaccauccucugcuacca
<<<<<<<..<<<<.......>>>>.<<<<<.......>>>>>.....<<<
<<.......>>>>>>>>>>>>....
    		 N/A N/A P41091 N/A
    7 8pj2:z
    (3.4)    		 BS02 >8pj2:w (identical to 8bsi:Lu, 8bsj:u, 8bsj:v, 8btd:u, 8btr:u, 7cpu:S6, 7cpv:S6, 6fec:N, 6hcj:33, 6hcq:33, 5k0y:N, 8k2c:CC, 4kzz:j, 7ls1:n2, 7ls2:n2, 8oz0:y, 8p03:1, 8p09:1, 8pj1:w, 8pj3:w, 8pj4:w, 8pj5:w, 8ppl:Iw, 7qp6:w, 7qp7:w, 7qvp:B5, 6qzp:S6, 7syr:i, 7sys:i, 7syv:i, 7syw:i, 7syx:i, 5t2c:An, 7tql:3, 4ug0:S6, 4v6x:BC, 8xsx:CC, 8xsz:CC, 8xsz:CD, 6y57:B4, 6yal:1, 6yam:1, 6yan:1, 6ybv:w, 6zmw:w)
    agcagaguggcgcagcggaagcgugcugggcccauaacccagaggucgau
ggaucgaaaccauccucugcuacca
<<<<<<<..<<<<.......>>>>.<<<<<.......>>>>>.....<<<
<<.......>>>>>>>>>>>>....
    		 N/A N/A P55010 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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