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BioLiP
Download all results in tab-seperated text for 3 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • The sequence is converted from residues with experimentally determined coordinates in the structure; residues not observed in the 3D structure are excluded.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (resolution)     		Site
    #     		Peptide
    sequence         		EC
    number     		GO
    terms     		UniProt PubMed Binding
    affinity
    1 6msh:D
    (3.6)    		 BS01 >6msh:v (identical to 8b5r:I, 8b6l:D, 7d63:X1, 7fd4:S, 7fd5:S, 7fid:S, 7fie:S, 7fiz:S, 7ln2:G, 7ln3:G, 7ln4:G, 7ln5:G, 6lqr:X1, 7nvr:v, 6q98:6, 6qj4:D, 8rbx:x, 8tj5:d, 8tj5:i, 7wbb:H)
    AAAAAAAAAAAAAAAAAAAAAA
    		 ? GO:0000502 ... P43686 30479383
    2 6msh:E
    (3.6)    		 BS01 >6msh:v (identical to 8b5r:I, 8b6l:D, 7d63:X1, 7fd4:S, 7fd5:S, 7fid:S, 7fie:S, 7fiz:S, 7ln2:G, 7ln3:G, 7ln4:G, 7ln5:G, 6lqr:X1, 7nvr:v, 6q98:6, 6qj4:D, 8rbx:x, 8tj5:d, 8tj5:i, 7wbb:H)
    AAAAAAAAAAAAAAAAAAAAAA
    		 ? GO:0000502 ... P62333 30479383
    3 6msh:F
    (3.6)    		 BS01 >6msh:v (identical to 8b5r:I, 8b6l:D, 7d63:X1, 7fd4:S, 7fd5:S, 7fid:S, 7fie:S, 7fiz:S, 7ln2:G, 7ln3:G, 7ln4:G, 7ln5:G, 6lqr:X1, 7nvr:v, 6q98:6, 6qj4:D, 8rbx:x, 8tj5:d, 8tj5:i, 7wbb:H)
    AAAAAAAAAAAAAAAAAAAAAA
    		 ? GO:0000502 ... P17980 30479383
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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