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BioLiP
Download all results in tab-seperated text for 2 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • The sequence is converted from residues with experimentally determined coordinates in the structure; residues not observed in the 3D structure are excluded.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (resolution)     		Site
    #     		Peptide
    sequence         		EC
    number     		GO
    terms     		UniProt PubMed Binding
    affinity
    1 6nah:O
    (2.7)    		 BS01 >6nah:r (identical to 6nah:c, 6nah:e, 6nah:f, 6nah:g, 6nah:h, 6nah:i, 6nah:j, 6nah:k, 6nah:l, 6nah:m, 6nah:n, 6nah:o, 6nah:p, 6nah:q, 6nah:s, 6nah:t, 6nah:u, 6nah:v, 6nah:w, 6nah:x, 6nah:y, 6nah:z, 6nah:0, 6nah:1, 6nah:2, 6nah:3, 6nah:4)
    FTPKAK
    		 3.4.21.92 GO:0004176 ... Q9JZ38 31925204
    2 6nah:U
    (2.7)    		 BS01 >6nah:r (identical to 6nah:c, 6nah:e, 6nah:f, 6nah:g, 6nah:h, 6nah:i, 6nah:j, 6nah:k, 6nah:l, 6nah:m, 6nah:n, 6nah:o, 6nah:p, 6nah:q, 6nah:s, 6nah:t, 6nah:u, 6nah:v, 6nah:w, 6nah:x, 6nah:y, 6nah:z, 6nah:0, 6nah:1, 6nah:2, 6nah:3, 6nah:4)
    FTPKAK
    		 3.4.21.92 GO:0004176 ... Q9JZ38 31925204
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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