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BioLiP
Download all results in tab-seperated text for 22 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 8jjr:B (2.8) BS17 CLA N/A GO:0009765 ... A0AA36MZ23 38493166
    2 8jjr:I (2.8) BS17 CLA N/A GO:0009765 ... A0AA36HTH0 38493166
    3 8jjr:U (2.8) BS08 CLA N/A GO:0009765 ... A0AA36JI10 38493166
    4 8jjr:a (2.8) BS41 CLA N/A GO:0009579 ... N/A 38493166
    5 8jjr:a (2.8) BS42 CLA N/A GO:0009579 ... N/A 38493166
    6 8jjr:a (2.8) BS43 CLA N/A GO:0009579 ... N/A 38493166
    7 8jjr:a (2.8) BS44 CLA N/A GO:0009579 ... N/A 38493166
    8 8jjr:a (2.8) BS45 CLA N/A GO:0009579 ... N/A 38493166
    9 8jjr:l (2.8) BS01 CLA N/A GO:0009522 ... A0AA36N262 38493166
    10 8jjr:l (2.8) BS02 CLA N/A GO:0009522 ... A0AA36N262 38493166
    11 8jjr:l (2.8) BS03 CLA N/A GO:0009522 ... A0AA36N262 38493166
    12 8jjr:l (2.8) BS04 CLA N/A GO:0009522 ... A0AA36N262 38493166
    13 8jjr:l (2.8) BS05 CLA N/A GO:0009522 ... A0AA36N262 38493166
    14 8jjr:l (2.8) BS06 CLA N/A GO:0009522 ... A0AA36N262 38493166
    15 8jjr:l (2.8) BS07 CLA N/A GO:0009522 ... A0AA36N262 38493166
    16 8jjr:l (2.8) BS08 CLA N/A GO:0009522 ... A0AA36N262 38493166
    17 8jjr:l (2.8) BS09 CLA N/A GO:0009522 ... A0AA36N262 38493166
    18 8jjr:l (2.8) BS10 CLA N/A GO:0009522 ... A0AA36N262 38493166
    19 8jjr:l (2.8) BS11 CLA N/A GO:0009522 ... A0AA36N262 38493166
    20 8jjr:l (2.8) BS12 CLA N/A GO:0009522 ... A0AA36N262 38493166
    21 8jjr:l (2.8) BS13 CLA N/A GO:0009522 ... A0AA36N262 38493166
    22 8jjr:l (2.8) BS14 CLA N/A GO:0009522 ... A0AA36N262 38493166
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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