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BioLiP
Download all results in tab-seperated text for 8 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • The sequence is converted from residues with experimentally determined coordinates in the structure; residues not observed in the 3D structure are excluded.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (resolution)     		Site
    #     		DNA
    sequence         		EC
    number     		GO
    terms     		UniProt PubMed Binding
    affinity
    1 8w9d:a
    (3.9)    		 BS02 >8w9d:j (identical to 5av5:J, 5av6:J, 5av8:J, 5av9:J, 5avb:J, 5avc:J, 3b6f:J, 3b6g:J, 8eue:J, 8euj:J, 1kx5:J, 3lja:J, 3mgp:J, 3mgq:J, 3mgr:J, 3mgs:J, 5omx:J, 2pyo:J, 8w9e:j, 8w9f:j, 4xzq:J, 4ys3:J, 4z66:J)
    atcaatatccacctgcagatactaccaaaagtgtatttggaaactgctcc
atcaaaaggcatgttcagctggattccagctgaacatgccttttgatgga
gcagtttccaaatacacttttggtagtatctgcaggtggatattgat
    		 ? GO:0000786 ... P68431 38598631
    2 8w9d:b
    (3.9)    		 BS02 >8w9d:j (identical to 5av5:J, 5av6:J, 5av8:J, 5av9:J, 5avb:J, 5avc:J, 3b6f:J, 3b6g:J, 8eue:J, 8euj:J, 1kx5:J, 3lja:J, 3mgp:J, 3mgq:J, 3mgr:J, 3mgs:J, 5omx:J, 2pyo:J, 8w9e:j, 8w9f:j, 4xzq:J, 4ys3:J, 4z66:J)
    atcaatatccacctgcagatactaccaaaagtgtatttggaaactgctcc
atcaaaaggcatgttcagctggattccagctgaacatgccttttgatgga
gcagtttccaaatacacttttggtagtatctgcaggtggatattgat
    		 ? GO:0000781 ... P62805 38598631
    3 8w9d:c
    (3.9)    		 BS02 >8w9d:j (identical to 5av5:J, 5av6:J, 5av8:J, 5av9:J, 5avb:J, 5avc:J, 3b6f:J, 3b6g:J, 8eue:J, 8euj:J, 1kx5:J, 3lja:J, 3mgp:J, 3mgq:J, 3mgr:J, 3mgs:J, 5omx:J, 2pyo:J, 8w9e:j, 8w9f:j, 4xzq:J, 4ys3:J, 4z66:J)
    atcaatatccacctgcagatactaccaaaagtgtatttggaaactgctcc
atcaaaaggcatgttcagctggattccagctgaacatgccttttgatgga
gcagtttccaaatacacttttggtagtatctgcaggtggatattgat
    		 ? GO:0000786 ... P04908 38598631
    4 8w9d:d
    (3.9)    		 BS02 >8w9d:j (identical to 5av5:J, 5av6:J, 5av8:J, 5av9:J, 5avb:J, 5avc:J, 3b6f:J, 3b6g:J, 8eue:J, 8euj:J, 1kx5:J, 3lja:J, 3mgp:J, 3mgq:J, 3mgr:J, 3mgs:J, 5omx:J, 2pyo:J, 8w9e:j, 8w9f:j, 4xzq:J, 4ys3:J, 4z66:J)
    atcaatatccacctgcagatactaccaaaagtgtatttggaaactgctcc
atcaaaaggcatgttcagctggattccagctgaacatgccttttgatgga
gcagtttccaaatacacttttggtagtatctgcaggtggatattgat
    		 ? GO:0000786 ... O60814 38598631
    5 8w9d:e
    (3.9)    		 BS02 >8w9d:j (identical to 5av5:J, 5av6:J, 5av8:J, 5av9:J, 5avb:J, 5avc:J, 3b6f:J, 3b6g:J, 8eue:J, 8euj:J, 1kx5:J, 3lja:J, 3mgp:J, 3mgq:J, 3mgr:J, 3mgs:J, 5omx:J, 2pyo:J, 8w9e:j, 8w9f:j, 4xzq:J, 4ys3:J, 4z66:J)
    atcaatatccacctgcagatactaccaaaagtgtatttggaaactgctcc
atcaaaaggcatgttcagctggattccagctgaacatgccttttgatgga
gcagtttccaaatacacttttggtagtatctgcaggtggatattgat
    		 ? GO:0000786 ... P68431 38598631
    6 8w9d:f
    (3.9)    		 BS02 >8w9d:j (identical to 5av5:J, 5av6:J, 5av8:J, 5av9:J, 5avb:J, 5avc:J, 3b6f:J, 3b6g:J, 8eue:J, 8euj:J, 1kx5:J, 3lja:J, 3mgp:J, 3mgq:J, 3mgr:J, 3mgs:J, 5omx:J, 2pyo:J, 8w9e:j, 8w9f:j, 4xzq:J, 4ys3:J, 4z66:J)
    atcaatatccacctgcagatactaccaaaagtgtatttggaaactgctcc
atcaaaaggcatgttcagctggattccagctgaacatgccttttgatgga
gcagtttccaaatacacttttggtagtatctgcaggtggatattgat
    		 ? GO:0000781 ... P62805 38598631
    7 8w9d:g
    (3.9)    		 BS02 >8w9d:j (identical to 5av5:J, 5av6:J, 5av8:J, 5av9:J, 5avb:J, 5avc:J, 3b6f:J, 3b6g:J, 8eue:J, 8euj:J, 1kx5:J, 3lja:J, 3mgp:J, 3mgq:J, 3mgr:J, 3mgs:J, 5omx:J, 2pyo:J, 8w9e:j, 8w9f:j, 4xzq:J, 4ys3:J, 4z66:J)
    atcaatatccacctgcagatactaccaaaagtgtatttggaaactgctcc
atcaaaaggcatgttcagctggattccagctgaacatgccttttgatgga
gcagtttccaaatacacttttggtagtatctgcaggtggatattgat
    		 ? GO:0000786 ... P04908 38598631
    8 8w9d:h
    (3.9)    		 BS02 >8w9d:j (identical to 5av5:J, 5av6:J, 5av8:J, 5av9:J, 5avb:J, 5avc:J, 3b6f:J, 3b6g:J, 8eue:J, 8euj:J, 1kx5:J, 3lja:J, 3mgp:J, 3mgq:J, 3mgr:J, 3mgs:J, 5omx:J, 2pyo:J, 8w9e:j, 8w9f:j, 4xzq:J, 4ys3:J, 4z66:J)
    atcaatatccacctgcagatactaccaaaagtgtatttggaaactgctcc
atcaaaaggcatgttcagctggattccagctgaacatgccttttgatgga
gcagtttccaaatacacttttggtagtatctgcaggtggatattgat
    		 ? GO:0000786 ... O60814 38598631
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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