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BioLiP
Download all results in tab-seperated text for 1 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • The sequence is converted from residues with experimentally determined coordinates in the structure; residues not observed in the 3D structure are excluded.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (resolution)
    Site
    #
    Peptide
    sequence
    EC
    number
    GO
    terms
    UniProt PubMed Binding
    affinity
    1 8d9s:x
    (20.0)
    BS01 >8d9s:i (identical to 6cm9:L, 8d4c:L, 8d4c:I, 8d4d:L, 8d4d:I, 8d4e:L, 8d4f:L, 8d4f:I, 8d4g:L, 8d4g:I, 8d9r:L, 8d9r:e, 8d9r:f, 8d9r:g, 8d9r:h, 8d9r:i, 8d9s:L, 8d9s:e, 8d9s:f, 8d9s:g, 8d9s:h, 8d9t:L, 8d9t:d, 8d9t:e, 8d9t:f, 8d9t:g, 8d9t:h, 8d9u:L, 8d9u:d, 8d9u:e, 8d9u:f, 8d9u:g, 8d9u:h, 8d9v:L, 8d9v:I, 8d9w:U, 8d9w:V, 6dff:L, 7ux3:L)
    KGENTSLLHP
    ? GO:0000139 ... Q96PC3 36269825

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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