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BioLiP
Download all results in tab-seperated text for 2 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • The sequence is converted from residues with experimentally determined coordinates in the structure; residues not observed in the 3D structure are excluded.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (resolution)     		Site
    #     		Peptide
    sequence         		EC
    number     		GO
    terms     		UniProt PubMed Binding
    affinity
    1 6pbs:B
    (2.5)    		 BS03 >6pbs:i (identical to 6pbs:D, 6pbs:E, 6pbs:F, 6pbs:H, 6pbs:J, 6pbs:L, 6pbs:N, 6pbs:P, 6pbs:Q, 6pbs:R, 6pbs:S, 6pbs:U, 6pbs:V, 6pbs:X, 6pbs:Z, 6pbs:a, 6pbs:b, 6pbs:c, 6pbs:d, 6pbs:f, 6pbs:g, 6pbs:h, 6pbs:j)
    AVITTVLVVVFV
    		 ? N/A P9WPC9 32355042
    2 6pbs:e
    (2.5)    		 BS01 >6pbs:i (identical to 6pbs:D, 6pbs:E, 6pbs:F, 6pbs:H, 6pbs:J, 6pbs:L, 6pbs:N, 6pbs:P, 6pbs:Q, 6pbs:R, 6pbs:S, 6pbs:U, 6pbs:V, 6pbs:X, 6pbs:Z, 6pbs:a, 6pbs:b, 6pbs:c, 6pbs:d, 6pbs:f, 6pbs:g, 6pbs:h, 6pbs:j)
    AVITTVLVVVFV
    		 ? N/A P9WPC9 32355042
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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