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BioLiP
Download all results in tab-seperated text for 12 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • The sequence is converted from residues with experimentally determined coordinates in the structure; residues not observed in the 3D structure are excluded.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (resolution)     		Site
    #     		RNA
    sequence         		EC
    number     		GO
    terms     		UniProt PubMed Binding
    affinity
    1 8ch6:C
    (5.9)    		 BS02 >8ch6:g (identical to 7qtt:g)
    ucggccuccgaacgguaagagccuagcauguagaacugguuaugauguca
uacuuauccugucccuuuuuuuucca
..................................................
..........................
    		 ? GO:0000245 ... O75533 37165190
    2 8ch6:D
    (5.9)    		 BS01 >8ch6:g (identical to 7qtt:g)
    ucggccuccgaacgguaagagccuagcauguagaacugguuaugauguca
uacuuauccugucccuuuuuuuucca
..................................................
..........................
    		 ? GO:0000398 ... Q7RTV0 37165190
    3 8ch6:E
    (5.9)    		 BS03 >8ch6:g (identical to 7qtt:g)
    ucggccuccgaacgguaagagccuagcauguagaacugguuaugauguca
uacuuauccugucccuuuuuuuucca
..................................................
..........................
    		 ? GO:0000398 ... Q13435 37165190
    4 8ch6:I
    (5.9)    		 BS04 >8ch6:g (identical to 7qtt:g)
    ucggccuccgaacgguaagagccuagcauguagaacugguuaugauguca
uacuuauccugucccuuuuuuuucca
..................................................
..........................
    		 ? GO:0000245 ... Q15428 37165190
    5 8ch6:J
    (5.9)    		 BS02 >8ch6:g (identical to 7qtt:g)
    ucggccuccgaacgguaagagccuagcauguagaacugguuaugauguca
uacuuauccugucccuuuuuuuucca
..................................................
..........................
    		 ? GO:0000375 ... Q12874 37165190
    6 8ch6:N
    (5.9)    		 BS01 >8ch6:g (identical to 7qtt:g)
    ucggccuccgaacgguaagagccuagcauguagaacugguuaugauguca
uacuuauccugucccuuuuuuuucca
..................................................
..........................
    		 3.6.4.13 GO:0000398 ... O60231 37165190
    7 8ch6:U
    (5.9)    		 BS02 >8ch6:g (identical to 7qtt:g)
    ucggccuccgaacgguaagagccuagcauguagaacugguuaugauguca
uacuuauccugucccuuuuuuuucca
..................................................
..........................
    		 ? GO:0000398 ... Q9NW64 37165190
    8 8ch6:V
    (5.9)    		 BS01 >8ch6:g (identical to 7qtt:g)
    ucggccuccgaacgguaagagccuagcauguagaacugguuaugauguca
uacuuauccugucccuuuuuuuucca
..................................................
..........................
    		 5.2.1.8 GO:0000413 ... Q8WUA2 37165190
    9 8ch6:Y
    (5.9)    		 BS02 >8ch6:g (identical to 7qtt:g)
    ucggccuccgaacgguaagagccuagcauguagaacugguuaugauguca
uacuuauccugucccuuuuuuuucca
..................................................
..........................
    		 ? GO:0000122 ... Q13573 37165190
    10 8ch6:Z
    (5.9)    		 BS01 >8ch6:g (identical to 7qtt:g)
    ucggccuccgaacgguaagagccuagcauguagaacugguuaugauguca
uacuuauccugucccuuuuuuuucca
..................................................
..........................
    		 2.3.2.27 GO:0000398 ... O15541 37165190
    11 8ch6:a
    (5.9)    		 BS04 >8ch6:g (identical to 7qtt:g)
    ucggccuccgaacgguaagagccuagcauguagaacugguuaugauguca
uacuuauccugucccuuuuuuuucca
..................................................
..........................
    		 ? GO:0000244 ... Q6P2Q9 37165190
    12 8ch6:q
    (5.9)    		 BS02 >8ch6:g (identical to 7qtt:g)
    ucggccuccgaacgguaagagccuagcauguagaacugguuaugauguca
uacuuauccugucccuuuuuuuucca
..................................................
..........................
    		 ? GO:0000398 ... Q9UQ35 37165190
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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