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BioLiP
Download all results in tab-seperated text for 59 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6jeo:dA (3.3) BS44 CLA 1.97.1.12 GO:0000287 ... P58576 31666526
    2 6jeo:dA (3.3) BS45 CLA 1.97.1.12 GO:0000287 ... P58576 31666526
    3 6jeo:dA (3.3) BS46 CLA 1.97.1.12 GO:0000287 ... P58576 31666526
    4 6jeo:dA (3.3) BS47 CLA 1.97.1.12 GO:0000287 ... P58576 31666526
    5 6jeo:dB (3.3) BS01 peptide 1.97.1.12 GO:0000287 ... P58565 31666526
    6 6jeo:dB (3.3) BS02 CLA 1.97.1.12 GO:0000287 ... P58565 31666526
    7 6jeo:dB (3.3) BS03 CLA 1.97.1.12 GO:0000287 ... P58565 31666526
    8 6jeo:dB (3.3) BS04 CLA 1.97.1.12 GO:0000287 ... P58565 31666526
    9 6jeo:dB (3.3) BS05 CLA 1.97.1.12 GO:0000287 ... P58565 31666526
    10 6jeo:dB (3.3) BS06 CLA 1.97.1.12 GO:0000287 ... P58565 31666526
    11 6jeo:dB (3.3) BS07 SF4 1.97.1.12 GO:0000287 ... P58565 31666526
    12 6jeo:dB (3.3) BS08 CLA 1.97.1.12 GO:0000287 ... P58565 31666526
    13 6jeo:dB (3.3) BS09 CLA 1.97.1.12 GO:0000287 ... P58565 31666526
    14 6jeo:dB (3.3) BS10 CLA 1.97.1.12 GO:0000287 ... P58565 31666526
    15 6jeo:dB (3.3) BS11 CLA 1.97.1.12 GO:0000287 ... P58565 31666526
    16 6jeo:dB (3.3) BS12 CLA 1.97.1.12 GO:0000287 ... P58565 31666526
    17 6jeo:dB (3.3) BS13 CLA 1.97.1.12 GO:0000287 ... P58565 31666526
    18 6jeo:dB (3.3) BS14 CLA 1.97.1.12 GO:0000287 ... P58565 31666526
    19 6jeo:dB (3.3) BS15 CLA 1.97.1.12 GO:0000287 ... P58565 31666526
    20 6jeo:dB (3.3) BS16 CLA 1.97.1.12 GO:0000287 ... P58565 31666526
    21 6jeo:dB (3.3) BS17 CLA 1.97.1.12 GO:0000287 ... P58565 31666526
    22 6jeo:dB (3.3) BS18 CLA 1.97.1.12 GO:0000287 ... P58565 31666526
    23 6jeo:dB (3.3) BS19 CLA 1.97.1.12 GO:0000287 ... P58565 31666526
    24 6jeo:dB (3.3) BS20 CLA 1.97.1.12 GO:0000287 ... P58565 31666526
    25 6jeo:dB (3.3) BS21 CLA 1.97.1.12 GO:0000287 ... P58565 31666526
    26 6jeo:dB (3.3) BS22 CLA 1.97.1.12 GO:0000287 ... P58565 31666526
    27 6jeo:dB (3.3) BS23 CLA 1.97.1.12 GO:0000287 ... P58565 31666526
    28 6jeo:dB (3.3) BS24 CLA 1.97.1.12 GO:0000287 ... P58565 31666526
    29 6jeo:dB (3.3) BS25 CLA 1.97.1.12 GO:0000287 ... P58565 31666526
    30 6jeo:dB (3.3) BS26 CLA 1.97.1.12 GO:0000287 ... P58565 31666526
    31 6jeo:dB (3.3) BS27 CLA 1.97.1.12 GO:0000287 ... P58565 31666526
    32 6jeo:dB (3.3) BS28 CLA 1.97.1.12 GO:0000287 ... P58565 31666526
    33 6jeo:dB (3.3) BS29 CLA 1.97.1.12 GO:0000287 ... P58565 31666526
    34 6jeo:dB (3.3) BS30 CLA 1.97.1.12 GO:0000287 ... P58565 31666526
    35 6jeo:dB (3.3) BS31 CLA 1.97.1.12 GO:0000287 ... P58565 31666526
    36 6jeo:dB (3.3) BS32 CLA 1.97.1.12 GO:0000287 ... P58565 31666526
    37 6jeo:dB (3.3) BS33 CLA 1.97.1.12 GO:0000287 ... P58565 31666526
    38 6jeo:dB (3.3) BS34 CLA 1.97.1.12 GO:0000287 ... P58565 31666526
    39 6jeo:dB (3.3) BS35 CLA 1.97.1.12 GO:0000287 ... P58565 31666526
    40 6jeo:dB (3.3) BS36 CLA 1.97.1.12 GO:0000287 ... P58565 31666526
    41 6jeo:dB (3.3) BS37 CLA 1.97.1.12 GO:0000287 ... P58565 31666526
    42 6jeo:dB (3.3) BS38 CLA 1.97.1.12 GO:0000287 ... P58565 31666526
    43 6jeo:dB (3.3) BS39 CLA 1.97.1.12 GO:0000287 ... P58565 31666526
    44 6jeo:dB (3.3) BS40 CLA 1.97.1.12 GO:0000287 ... P58565 31666526
    45 6jeo:dB (3.3) BS41 CLA 1.97.1.12 GO:0000287 ... P58565 31666526
    46 6jeo:dB (3.3) BS42 CLA 1.97.1.12 GO:0000287 ... P58565 31666526
    47 6jeo:dB (3.3) BS43 CLA 1.97.1.12 GO:0000287 ... P58565 31666526
    48 6jeo:dB (3.3) BS44 CLA 1.97.1.12 GO:0000287 ... P58565 31666526
    49 6jeo:dB (3.3) BS45 CLA 1.97.1.12 GO:0000287 ... P58565 31666526
    50 6jeo:dB (3.3) BS46 CLA 1.97.1.12 GO:0000287 ... P58565 31666526
    51 6jeo:dB (3.3) BS47 CLA 1.97.1.12 GO:0000287 ... P58565 31666526
    52 6jeo:dB (3.3) BS48 CLA 1.97.1.12 GO:0000287 ... P58565 31666526
    53 6jeo:dB (3.3) BS49 PQN 1.97.1.12 GO:0000287 ... P58565 31666526
    54 6jeo:dF (3.3) BS02 CLA ? GO:0009522 ... P58564 31666526
    55 6jeo:dF (3.3) BS03 CLA ? GO:0009522 ... P58564 31666526
    56 6jeo:dI (3.3) BS01 CLA ? GO:0009522 ... P58560 31666526
    57 6jeo:dJ (3.3) BS02 CLA ? GO:0009522 ... P58568 31666526
    58 6jeo:dL (3.3) BS05 CLA ? GO:0009522 ... P58577 31666526
    59 6jeo:dM (3.3) BS01 CLA ? GO:0009522 ... Q8YNB0 31666526
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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