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BioLiP
Download all results in tab-seperated text for 20 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 5xnl:a (2.7) BS09 CLA 1.10.3.9 GO:0005506 ... P06585 28839073
    2 5xnl:c (2.7) BS01 OEX ? GO:0005737 ... P06004 28839073
    3 5xnl:c (2.7) BS02 CLA ? GO:0005737 ... P06004 28839073
    4 5xnl:c (2.7) BS03 CLA ? GO:0005737 ... P06004 28839073
    5 5xnl:c (2.7) BS04 CLA ? GO:0005737 ... P06004 28839073
    6 5xnl:c (2.7) BS05 CLA ? GO:0005737 ... P06004 28839073
    7 5xnl:c (2.7) BS06 CLA ? GO:0005737 ... P06004 28839073
    8 5xnl:c (2.7) BS07 CLA ? GO:0005737 ... P06004 28839073
    9 5xnl:c (2.7) BS08 CLA ? GO:0005737 ... P06004 28839073
    10 5xnl:c (2.7) BS09 CLA ? GO:0005737 ... P06004 28839073
    11 5xnl:c (2.7) BS10 CLA ? GO:0005737 ... P06004 28839073
    12 5xnl:c (2.7) BS11 CLA ? GO:0005737 ... P06004 28839073
    13 5xnl:c (2.7) BS12 CLA ? GO:0005737 ... P06004 28839073
    14 5xnl:c (2.7) BS13 CLA ? GO:0005737 ... P06004 28839073
    15 5xnl:c (2.7) BS14 CLA ? GO:0005737 ... P06004 28839073
    16 5xnl:i (2.7) BS02 CLA ? GO:0005737 ... D5MAJ9 28839073
    17 5xnl:k (2.7) BS01 CLA ? GO:0005737 ... D5MAJ8 28839073
    18 5xnl:k (2.7) BS02 CLA ? GO:0005737 ... D5MAJ8 28839073
    19 5xnl:s (2.7) BS01 CLA ? GO:0009416 ... A0A2D0TCJ1 28839073
    20 5xnl:z (2.7) BS01 CLA ? GO:0009507 ... Q32902 28839073
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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