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BioLiP
Download all results in tab-seperated text for 19 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 5b5e:a (1.87) BS09 CLA 1.10.3.9 GO:0005506 ... P51765 28102667
    2 5b5e:c (1.87) BS01 OEX ? GO:0005737 ... D0VWR7 28102667
    3 5b5e:c (1.87) BS02 CA ? GO:0005737 ... D0VWR7 28102667
    4 5b5e:c (1.87) BS03 CLA ? GO:0005737 ... D0VWR7 28102667
    5 5b5e:c (1.87) BS04 CLA ? GO:0005737 ... D0VWR7 28102667
    6 5b5e:c (1.87) BS05 CLA ? GO:0005737 ... D0VWR7 28102667
    7 5b5e:c (1.87) BS06 CLA ? GO:0005737 ... D0VWR7 28102667
    8 5b5e:c (1.87) BS07 CLA ? GO:0005737 ... D0VWR7 28102667
    9 5b5e:c (1.87) BS08 CLA ? GO:0005737 ... D0VWR7 28102667
    10 5b5e:c (1.87) BS09 CLA ? GO:0005737 ... D0VWR7 28102667
    11 5b5e:c (1.87) BS10 CLA ? GO:0005737 ... D0VWR7 28102667
    12 5b5e:c (1.87) BS11 CLA ? GO:0005737 ... D0VWR7 28102667
    13 5b5e:c (1.87) BS12 CLA ? GO:0005737 ... D0VWR7 28102667
    14 5b5e:c (1.87) BS13 CLA ? GO:0005737 ... D0VWR7 28102667
    15 5b5e:c (1.87) BS14 CLA ? GO:0005737 ... D0VWR7 28102667
    16 5b5e:c (1.87) BS15 CLA ? GO:0005737 ... D0VWR7 28102667
    17 5b5e:k (1.87) BS02 CLA ? GO:0005737 ... P19054 28102667
    18 5b5e:k (1.87) BS03 CLA ? GO:0005737 ... P19054 28102667
    19 5b5e:z (1.87) BS02 CLA ? GO:0009523 ... D0VWR5 28102667
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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