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BioLiP
Download all results in tab-seperated text for 17 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 4pj0:a (2.437) BS10 CLA 1.10.3.9 GO:0005506 ... P0A444 25438669
    2 4pj0:c (2.437) BS01 OEX 1.10.3.9 GO:0005737 ... Q8DIF8 25438669
    3 4pj0:c (2.437) BS02 CLA 1.10.3.9 GO:0005737 ... Q8DIF8 25438669
    4 4pj0:c (2.437) BS03 CLA 1.10.3.9 GO:0005737 ... Q8DIF8 25438669
    5 4pj0:c (2.437) BS04 CLA 1.10.3.9 GO:0005737 ... Q8DIF8 25438669
    6 4pj0:c (2.437) BS05 CLA 1.10.3.9 GO:0005737 ... Q8DIF8 25438669
    7 4pj0:c (2.437) BS06 CLA 1.10.3.9 GO:0005737 ... Q8DIF8 25438669
    8 4pj0:c (2.437) BS07 CLA 1.10.3.9 GO:0005737 ... Q8DIF8 25438669
    9 4pj0:c (2.437) BS08 CLA 1.10.3.9 GO:0005737 ... Q8DIF8 25438669
    10 4pj0:c (2.437) BS09 CLA 1.10.3.9 GO:0005737 ... Q8DIF8 25438669
    11 4pj0:c (2.437) BS10 CLA 1.10.3.9 GO:0005737 ... Q8DIF8 25438669
    12 4pj0:c (2.437) BS11 CLA 1.10.3.9 GO:0005737 ... Q8DIF8 25438669
    13 4pj0:c (2.437) BS12 CLA 1.10.3.9 GO:0005737 ... Q8DIF8 25438669
    14 4pj0:c (2.437) BS13 CLA 1.10.3.9 GO:0005737 ... Q8DIF8 25438669
    15 4pj0:c (2.437) BS14 CLA 1.10.3.9 GO:0005737 ... Q8DIF8 25438669
    16 4pj0:k (2.437) BS02 CLA 1.10.3.9 GO:0005737 ... Q9F1K9 25438669
    17 4pj0:k (2.437) BS03 CLA 1.10.3.9 GO:0005737 ... Q9F1K9 25438669
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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