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BioLiP
Download all results in tab-seperated text for 4 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • The sequence is converted from residues with experimentally determined coordinates in the structure; residues not observed in the 3D structure are excluded.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (resolution)     		Site
    #     		Peptide
    sequence         		EC
    number     		GO
    terms     		UniProt PubMed Binding
    affinity
    1 8fxr:g2
    (4.5)    		 BS01 >8fxr:b2 (identical to 8fwg:a1, 8fwg:b1, 8fwg:e1, 8fwg:a2, 8fwg:b2, 8fwg:e2, 8fwg:a5, 8fwg:b5, 8fwg:e5, 8fwg:a6, 8fwg:b6, 8fwg:e6, 8fwg:a7, 8fwg:b7, 8fwg:e7, 8fxp:a, 8fxp:b, 8fxp:e, 8fxp:AO, 8fxp:AP, 8fxp:AR, 8fxp:AS, 8fxp:AQ, 8fxp:AT, 8fxr:a1, 8fxr:b1, 8fxr:e1, 8fxr:a2, 8fxr:e2, 8fxr:a5, 8fxr:b5, 8fxr:e5, 8fxr:a6, 8fxr:b6, 8fxr:e6, 8fxr:a7, 8fxr:b7, 8fxr:e7)
    MVKLNCRPLCQAPTASRLVSPPCFICRG
    		 ? N/A A0A482MFS6 37684529
    2 8fxr:r2
    (4.5)    		 BS01 >8fxr:b2 (identical to 8fwg:a1, 8fwg:b1, 8fwg:e1, 8fwg:a2, 8fwg:b2, 8fwg:e2, 8fwg:a5, 8fwg:b5, 8fwg:e5, 8fwg:a6, 8fwg:b6, 8fwg:e6, 8fwg:a7, 8fwg:b7, 8fwg:e7, 8fxp:a, 8fxp:b, 8fxp:e, 8fxp:AO, 8fxp:AP, 8fxp:AR, 8fxp:AS, 8fxp:AQ, 8fxp:AT, 8fxr:a1, 8fxr:b1, 8fxr:e1, 8fxr:a2, 8fxr:e2, 8fxr:a5, 8fxr:b5, 8fxr:e5, 8fxr:a6, 8fxr:b6, 8fxr:e6, 8fxr:a7, 8fxr:b7, 8fxr:e7)
    MVKLNCRPLCQAPTASRLVSPPCFICRG
    		 ? N/A A0A482MFS6 37684529
    3 8fxr:s2
    (4.5)    		 BS01 >8fxr:b2 (identical to 8fwg:a1, 8fwg:b1, 8fwg:e1, 8fwg:a2, 8fwg:b2, 8fwg:e2, 8fwg:a5, 8fwg:b5, 8fwg:e5, 8fwg:a6, 8fwg:b6, 8fwg:e6, 8fwg:a7, 8fwg:b7, 8fwg:e7, 8fxp:a, 8fxp:b, 8fxp:e, 8fxp:AO, 8fxp:AP, 8fxp:AR, 8fxp:AS, 8fxp:AQ, 8fxp:AT, 8fxr:a1, 8fxr:b1, 8fxr:e1, 8fxr:a2, 8fxr:e2, 8fxr:a5, 8fxr:b5, 8fxr:e5, 8fxr:a6, 8fxr:b6, 8fxr:e6, 8fxr:a7, 8fxr:b7, 8fxr:e7)
    MVKLNCRPLCQAPTASRLVSPPCFICRG
    		 ? N/A A0A482MFS0 37684529
    4 8fxr:t2
    (4.5)    		 BS01 >8fxr:b2 (identical to 8fwg:a1, 8fwg:b1, 8fwg:e1, 8fwg:a2, 8fwg:b2, 8fwg:e2, 8fwg:a5, 8fwg:b5, 8fwg:e5, 8fwg:a6, 8fwg:b6, 8fwg:e6, 8fwg:a7, 8fwg:b7, 8fwg:e7, 8fxp:a, 8fxp:b, 8fxp:e, 8fxp:AO, 8fxp:AP, 8fxp:AR, 8fxp:AS, 8fxp:AQ, 8fxp:AT, 8fxr:a1, 8fxr:b1, 8fxr:e1, 8fxr:a2, 8fxr:e2, 8fxr:a5, 8fxr:b5, 8fxr:e5, 8fxr:a6, 8fxr:b6, 8fxr:e6, 8fxr:a7, 8fxr:b7, 8fxr:e7)
    MVKLNCRPLCQAPTASRLVSPPCFICRG
    		 ? N/A A0A482MFS0 37684529
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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