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BioLiP
Download all results in tab-seperated text for 53 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 8jzf:B (2.7) BS01 CLA N/A GO:0009765 ... N/A 38319970
    2 8jzf:a (2.7) BS38 CLA 1.97.1.12 GO:0009507 ... A0A0A0N2S9 38319970
    3 8jzf:a (2.7) BS39 CLA 1.97.1.12 GO:0009507 ... A0A0A0N2S9 38319970
    4 8jzf:a (2.7) BS40 CLA 1.97.1.12 GO:0009507 ... A0A0A0N2S9 38319970
    5 8jzf:a (2.7) BS41 CLA 1.97.1.12 GO:0009507 ... A0A0A0N2S9 38319970
    6 8jzf:b (2.7) BS01 CLA 1.97.1.12 GO:0009507 ... A0A0A0N2P0 38319970
    7 8jzf:b (2.7) BS02 CLA 1.97.1.12 GO:0009507 ... A0A0A0N2P0 38319970
    8 8jzf:b (2.7) BS03 CLA 1.97.1.12 GO:0009507 ... A0A0A0N2P0 38319970
    9 8jzf:b (2.7) BS04 CLA 1.97.1.12 GO:0009507 ... A0A0A0N2P0 38319970
    10 8jzf:b (2.7) BS05 CLA 1.97.1.12 GO:0009507 ... A0A0A0N2P0 38319970
    11 8jzf:b (2.7) BS06 CLA 1.97.1.12 GO:0009507 ... A0A0A0N2P0 38319970
    12 8jzf:b (2.7) BS07 CLA 1.97.1.12 GO:0009507 ... A0A0A0N2P0 38319970
    13 8jzf:b (2.7) BS08 CLA 1.97.1.12 GO:0009507 ... A0A0A0N2P0 38319970
    14 8jzf:b (2.7) BS09 CLA 1.97.1.12 GO:0009507 ... A0A0A0N2P0 38319970
    15 8jzf:b (2.7) BS10 CLA 1.97.1.12 GO:0009507 ... A0A0A0N2P0 38319970
    16 8jzf:b (2.7) BS11 SF4 1.97.1.12 GO:0009507 ... A0A0A0N2P0 38319970
    17 8jzf:b (2.7) BS12 CLA 1.97.1.12 GO:0009507 ... A0A0A0N2P0 38319970
    18 8jzf:b (2.7) BS13 CLA 1.97.1.12 GO:0009507 ... A0A0A0N2P0 38319970
    19 8jzf:b (2.7) BS14 CLA 1.97.1.12 GO:0009507 ... A0A0A0N2P0 38319970
    20 8jzf:b (2.7) BS15 CLA 1.97.1.12 GO:0009507 ... A0A0A0N2P0 38319970
    21 8jzf:b (2.7) BS16 CLA 1.97.1.12 GO:0009507 ... A0A0A0N2P0 38319970
    22 8jzf:b (2.7) BS17 CLA 1.97.1.12 GO:0009507 ... A0A0A0N2P0 38319970
    23 8jzf:b (2.7) BS18 CLA 1.97.1.12 GO:0009507 ... A0A0A0N2P0 38319970
    24 8jzf:b (2.7) BS19 CLA 1.97.1.12 GO:0009507 ... A0A0A0N2P0 38319970
    25 8jzf:b (2.7) BS20 CLA 1.97.1.12 GO:0009507 ... A0A0A0N2P0 38319970
    26 8jzf:b (2.7) BS21 CLA 1.97.1.12 GO:0009507 ... A0A0A0N2P0 38319970
    27 8jzf:b (2.7) BS22 CLA 1.97.1.12 GO:0009507 ... A0A0A0N2P0 38319970
    28 8jzf:b (2.7) BS23 CLA 1.97.1.12 GO:0009507 ... A0A0A0N2P0 38319970
    29 8jzf:b (2.7) BS24 CLA 1.97.1.12 GO:0009507 ... A0A0A0N2P0 38319970
    30 8jzf:b (2.7) BS25 CLA 1.97.1.12 GO:0009507 ... A0A0A0N2P0 38319970
    31 8jzf:b (2.7) BS26 CLA 1.97.1.12 GO:0009507 ... A0A0A0N2P0 38319970
    32 8jzf:b (2.7) BS27 CLA 1.97.1.12 GO:0009507 ... A0A0A0N2P0 38319970
    33 8jzf:b (2.7) BS28 CLA 1.97.1.12 GO:0009507 ... A0A0A0N2P0 38319970
    34 8jzf:b (2.7) BS29 CLA 1.97.1.12 GO:0009507 ... A0A0A0N2P0 38319970
    35 8jzf:b (2.7) BS30 CLA 1.97.1.12 GO:0009507 ... A0A0A0N2P0 38319970
    36 8jzf:b (2.7) BS31 CLA 1.97.1.12 GO:0009507 ... A0A0A0N2P0 38319970
    37 8jzf:b (2.7) BS32 CLA 1.97.1.12 GO:0009507 ... A0A0A0N2P0 38319970
    38 8jzf:b (2.7) BS33 CLA 1.97.1.12 GO:0009507 ... A0A0A0N2P0 38319970
    39 8jzf:b (2.7) BS34 CLA 1.97.1.12 GO:0009507 ... A0A0A0N2P0 38319970
    40 8jzf:b (2.7) BS35 CLA 1.97.1.12 GO:0009507 ... A0A0A0N2P0 38319970
    41 8jzf:b (2.7) BS36 CLA 1.97.1.12 GO:0009507 ... A0A0A0N2P0 38319970
    42 8jzf:b (2.7) BS37 CLA 1.97.1.12 GO:0009507 ... A0A0A0N2P0 38319970
    43 8jzf:b (2.7) BS38 PQN 1.97.1.12 GO:0009507 ... A0A0A0N2P0 38319970
    44 8jzf:b (2.7) BS39 DD6 1.97.1.12 GO:0009507 ... A0A0A0N2P0 38319970
    45 8jzf:f (2.7) BS07 CLA ? GO:0009522 ... A0A812QHR9 38319970
    46 8jzf:f (2.7) BS08 CLA ? GO:0009522 ... A0A812QHR9 38319970
    47 8jzf:h (2.7) BS06 CLA ? N/A A0A812Q823 38319970
    48 8jzf:h (2.7) BS07 CLA ? N/A A0A812Q823 38319970
    49 8jzf:i (2.7) BS01 CLA ? GO:0009522 ... A0A812IJ75 38319970
    50 8jzf:i (2.7) BS02 CLA ? GO:0009522 ... A0A812IJ75 38319970
    51 8jzf:l (2.7) BS12 CLA ? GO:0009522 ... A0A812S6M2 38319970
    52 8jzf:l (2.7) BS13 CLA ? GO:0009522 ... A0A812S6M2 38319970
    53 8jzf:m (2.7) BS02 CLA ? N/A A0A812M556 38319970
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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