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BioLiP
Download all results in tab-seperated text for 62 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 4xk8:6 (2.8) BS01 CLA ? GO:0009765 ... Q01667 26023133
    2 4xk8:a (2.8) BS49 CLA 1.97.1.12 GO:0000287 ... P05310 26023133
    3 4xk8:a (2.8) BS50 CLA 1.97.1.12 GO:0000287 ... P05310 26023133
    4 4xk8:a (2.8) BS51 CLA 1.97.1.12 GO:0000287 ... P05310 26023133
    5 4xk8:a (2.8) BS52 CLA 1.97.1.12 GO:0000287 ... P05310 26023133
    6 4xk8:b (2.8) BS01 CLA 1.97.1.12 GO:0000287 ... P05311 26023133
    7 4xk8:b (2.8) BS02 CLA 1.97.1.12 GO:0000287 ... P05311 26023133
    8 4xk8:b (2.8) BS03 CLA 1.97.1.12 GO:0000287 ... P05311 26023133
    9 4xk8:b (2.8) BS04 CLA 1.97.1.12 GO:0000287 ... P05311 26023133
    10 4xk8:b (2.8) BS05 CLA 1.97.1.12 GO:0000287 ... P05311 26023133
    11 4xk8:b (2.8) BS06 CLA 1.97.1.12 GO:0000287 ... P05311 26023133
    12 4xk8:b (2.8) BS07 SF4 1.97.1.12 GO:0000287 ... P05311 26023133
    13 4xk8:b (2.8) BS08 CLA 1.97.1.12 GO:0000287 ... P05311 26023133
    14 4xk8:b (2.8) BS09 CLA 1.97.1.12 GO:0000287 ... P05311 26023133
    15 4xk8:b (2.8) BS10 CLA 1.97.1.12 GO:0000287 ... P05311 26023133
    16 4xk8:b (2.8) BS11 CLA 1.97.1.12 GO:0000287 ... P05311 26023133
    17 4xk8:b (2.8) BS12 CLA 1.97.1.12 GO:0000287 ... P05311 26023133
    18 4xk8:b (2.8) BS13 CLA 1.97.1.12 GO:0000287 ... P05311 26023133
    19 4xk8:b (2.8) BS14 CLA 1.97.1.12 GO:0000287 ... P05311 26023133
    20 4xk8:b (2.8) BS15 CLA 1.97.1.12 GO:0000287 ... P05311 26023133
    21 4xk8:b (2.8) BS16 CLA 1.97.1.12 GO:0000287 ... P05311 26023133
    22 4xk8:b (2.8) BS17 CLA 1.97.1.12 GO:0000287 ... P05311 26023133
    23 4xk8:b (2.8) BS18 CLA 1.97.1.12 GO:0000287 ... P05311 26023133
    24 4xk8:b (2.8) BS19 CLA 1.97.1.12 GO:0000287 ... P05311 26023133
    25 4xk8:b (2.8) BS20 CLA 1.97.1.12 GO:0000287 ... P05311 26023133
    26 4xk8:b (2.8) BS21 CLA 1.97.1.12 GO:0000287 ... P05311 26023133
    27 4xk8:b (2.8) BS22 CLA 1.97.1.12 GO:0000287 ... P05311 26023133
    28 4xk8:b (2.8) BS23 CLA 1.97.1.12 GO:0000287 ... P05311 26023133
    29 4xk8:b (2.8) BS24 CLA 1.97.1.12 GO:0000287 ... P05311 26023133
    30 4xk8:b (2.8) BS25 CLA 1.97.1.12 GO:0000287 ... P05311 26023133
    31 4xk8:b (2.8) BS26 CLA 1.97.1.12 GO:0000287 ... P05311 26023133
    32 4xk8:b (2.8) BS27 CLA 1.97.1.12 GO:0000287 ... P05311 26023133
    33 4xk8:b (2.8) BS28 CLA 1.97.1.12 GO:0000287 ... P05311 26023133
    34 4xk8:b (2.8) BS29 CLA 1.97.1.12 GO:0000287 ... P05311 26023133
    35 4xk8:b (2.8) BS30 CLA 1.97.1.12 GO:0000287 ... P05311 26023133
    36 4xk8:b (2.8) BS31 CLA 1.97.1.12 GO:0000287 ... P05311 26023133
    37 4xk8:b (2.8) BS32 CLA 1.97.1.12 GO:0000287 ... P05311 26023133
    38 4xk8:b (2.8) BS33 CLA 1.97.1.12 GO:0000287 ... P05311 26023133
    39 4xk8:b (2.8) BS34 CLA 1.97.1.12 GO:0000287 ... P05311 26023133
    40 4xk8:b (2.8) BS35 CLA 1.97.1.12 GO:0000287 ... P05311 26023133
    41 4xk8:b (2.8) BS36 CLA 1.97.1.12 GO:0000287 ... P05311 26023133
    42 4xk8:b (2.8) BS37 CLA 1.97.1.12 GO:0000287 ... P05311 26023133
    43 4xk8:b (2.8) BS38 CLA 1.97.1.12 GO:0000287 ... P05311 26023133
    44 4xk8:b (2.8) BS39 CLA 1.97.1.12 GO:0000287 ... P05311 26023133
    45 4xk8:b (2.8) BS40 CLA 1.97.1.12 GO:0000287 ... P05311 26023133
    46 4xk8:b (2.8) BS41 CLA 1.97.1.12 GO:0000287 ... P05311 26023133
    47 4xk8:b (2.8) BS42 CLA 1.97.1.12 GO:0000287 ... P05311 26023133
    48 4xk8:b (2.8) BS43 CLA 1.97.1.12 GO:0000287 ... P05311 26023133
    49 4xk8:b (2.8) BS44 CLA 1.97.1.12 GO:0000287 ... P05311 26023133
    50 4xk8:b (2.8) BS45 CLA 1.97.1.12 GO:0000287 ... P05311 26023133
    51 4xk8:b (2.8) BS46 CLA 1.97.1.12 GO:0000287 ... P05311 26023133
    52 4xk8:b (2.8) BS47 CLA 1.97.1.12 GO:0000287 ... P05311 26023133
    53 4xk8:b (2.8) BS48 PQN 1.97.1.12 GO:0000287 ... P05311 26023133
    54 4xk8:b (2.8) BS49 CLA 1.97.1.12 GO:0000287 ... P05311 26023133
    55 4xk8:f (2.8) BS02 CLA ? GO:0009522 ... P12355 26023133
    56 4xk8:g (2.8) BS01 CLA ? GO:0009522 ... P12357 26023133
    57 4xk8:g (2.8) BS02 CLA ? GO:0009522 ... P12357 26023133
    58 4xk8:h (2.8) BS01 CLA ? GO:0009522 ... C6T221 26023133
    59 4xk8:i (2.8) BS01 CLA ? GO:0009522 ... P17227 26023133
    60 4xk8:i (2.8) BS02 CLA ? GO:0009522 ... P17227 26023133
    61 4xk8:j (2.8) BS03 CLA ? GO:0009522 ... A4GGC6 26023133
    62 4xk8:l (2.8) BS03 CLA ? GO:0009522 ... E1C9L1 26023133
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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