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BioLiP
Download all results in tab-seperated text for 57 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 8jw0:A (2.9) BS01 CLA N/A GO:0009765 ... N/A 38319970
    2 8jw0:G (2.9) BS01 CLA N/A GO:0009765 ... N/A 38319970
    3 8jw0:a (2.9) BS35 CLA 1.97.1.12 GO:0000287 ... P58309 38319970
    4 8jw0:a (2.9) BS36 CLA 1.97.1.12 GO:0000287 ... P58309 38319970
    5 8jw0:a (2.9) BS37 CLA 1.97.1.12 GO:0000287 ... P58309 38319970
    6 8jw0:a (2.9) BS38 CLA 1.97.1.12 GO:0000287 ... P58309 38319970
    7 8jw0:a (2.9) BS39 CLA 1.97.1.12 GO:0000287 ... P58309 38319970
    8 8jw0:a (2.9) BS40 CLA 1.97.1.12 GO:0000287 ... P58309 38319970
    9 8jw0:b (2.9) BS01 CLA 1.97.1.12 GO:0009507 ... P58383 38319970
    10 8jw0:b (2.9) BS02 CLA 1.97.1.12 GO:0009507 ... P58383 38319970
    11 8jw0:b (2.9) BS03 CLA 1.97.1.12 GO:0009507 ... P58383 38319970
    12 8jw0:b (2.9) BS04 SF4 1.97.1.12 GO:0009507 ... P58383 38319970
    13 8jw0:b (2.9) BS05 CLA 1.97.1.12 GO:0009507 ... P58383 38319970
    14 8jw0:b (2.9) BS06 CLA 1.97.1.12 GO:0009507 ... P58383 38319970
    15 8jw0:b (2.9) BS07 CLA 1.97.1.12 GO:0009507 ... P58383 38319970
    16 8jw0:b (2.9) BS08 CLA 1.97.1.12 GO:0009507 ... P58383 38319970
    17 8jw0:b (2.9) BS09 CLA 1.97.1.12 GO:0009507 ... P58383 38319970
    18 8jw0:b (2.9) BS10 CLA 1.97.1.12 GO:0009507 ... P58383 38319970
    19 8jw0:b (2.9) BS11 CLA 1.97.1.12 GO:0009507 ... P58383 38319970
    20 8jw0:b (2.9) BS12 CLA 1.97.1.12 GO:0009507 ... P58383 38319970
    21 8jw0:b (2.9) BS13 CLA 1.97.1.12 GO:0009507 ... P58383 38319970
    22 8jw0:b (2.9) BS14 CLA 1.97.1.12 GO:0009507 ... P58383 38319970
    23 8jw0:b (2.9) BS15 CLA 1.97.1.12 GO:0009507 ... P58383 38319970
    24 8jw0:b (2.9) BS16 CLA 1.97.1.12 GO:0009507 ... P58383 38319970
    25 8jw0:b (2.9) BS17 CLA 1.97.1.12 GO:0009507 ... P58383 38319970
    26 8jw0:b (2.9) BS18 CLA 1.97.1.12 GO:0009507 ... P58383 38319970
    27 8jw0:b (2.9) BS19 CLA 1.97.1.12 GO:0009507 ... P58383 38319970
    28 8jw0:b (2.9) BS20 CLA 1.97.1.12 GO:0009507 ... P58383 38319970
    29 8jw0:b (2.9) BS21 CLA 1.97.1.12 GO:0009507 ... P58383 38319970
    30 8jw0:b (2.9) BS22 CLA 1.97.1.12 GO:0009507 ... P58383 38319970
    31 8jw0:b (2.9) BS23 CLA 1.97.1.12 GO:0009507 ... P58383 38319970
    32 8jw0:b (2.9) BS24 CLA 1.97.1.12 GO:0009507 ... P58383 38319970
    33 8jw0:b (2.9) BS25 CLA 1.97.1.12 GO:0009507 ... P58383 38319970
    34 8jw0:b (2.9) BS26 CLA 1.97.1.12 GO:0009507 ... P58383 38319970
    35 8jw0:b (2.9) BS27 CLA 1.97.1.12 GO:0009507 ... P58383 38319970
    36 8jw0:b (2.9) BS28 CLA 1.97.1.12 GO:0009507 ... P58383 38319970
    37 8jw0:b (2.9) BS29 CLA 1.97.1.12 GO:0009507 ... P58383 38319970
    38 8jw0:b (2.9) BS30 CLA 1.97.1.12 GO:0009507 ... P58383 38319970
    39 8jw0:b (2.9) BS31 PQN 1.97.1.12 GO:0009507 ... P58383 38319970
    40 8jw0:b (2.9) BS32 CLA 1.97.1.12 GO:0009507 ... P58383 38319970
    41 8jw0:b (2.9) BS33 CLA 1.97.1.12 GO:0009507 ... P58383 38319970
    42 8jw0:b (2.9) BS34 CLA 1.97.1.12 GO:0009507 ... P58383 38319970
    43 8jw0:b (2.9) BS35 CLA 1.97.1.12 GO:0009507 ... P58383 38319970
    44 8jw0:b (2.9) BS36 CLA 1.97.1.12 GO:0009507 ... P58383 38319970
    45 8jw0:b (2.9) BS37 CLA 1.97.1.12 GO:0009507 ... P58383 38319970
    46 8jw0:b (2.9) BS38 CLA 1.97.1.12 GO:0009507 ... P58383 38319970
    47 8jw0:b (2.9) BS39 CLA 1.97.1.12 GO:0009507 ... P58383 38319970
    48 8jw0:b (2.9) BS40 DD6 1.97.1.12 GO:0009507 ... P58383 38319970
    49 8jw0:b (2.9) BS41 CLA 1.97.1.12 GO:0009507 ... P58383 38319970
    50 8jw0:b (2.9) BS42 CLA 1.97.1.12 GO:0009507 ... P58383 38319970
    51 8jw0:b (2.9) BS43 CLA 1.97.1.12 GO:0009507 ... P58383 38319970
    52 8jw0:f (2.9) BS02 CLA N/A GO:0009522 ... N/A 38319970
    53 8jw0:f (2.9) BS03 CLA N/A GO:0009522 ... N/A 38319970
    54 8jw0:h (2.9) BS01 CLA N/A N/A N/A 38319970
    55 8jw0:j (2.9) BS03 CLA N/A GO:0009522 ... N/A 38319970
    56 8jw0:l (2.9) BS04 CLA N/A GO:0009522 ... N/A 38319970
    57 8jw0:m (2.9) BS01 CLA N/A N/A N/A 38319970
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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