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BioLiP
Download all results in tab-seperated text for 64 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 8am5:a (3.1) BS01 CL0 1.97.1.12 GO:0000287 ... P29254 37542031
    2 8am5:a (3.1) BS02 CLA 1.97.1.12 GO:0000287 ... P29254 37542031
    3 8am5:a (3.1) BS03 CLA 1.97.1.12 GO:0000287 ... P29254 37542031
    4 8am5:a (3.1) BS04 CLA 1.97.1.12 GO:0000287 ... P29254 37542031
    5 8am5:a (3.1) BS05 CLA 1.97.1.12 GO:0000287 ... P29254 37542031
    6 8am5:a (3.1) BS06 CLA 1.97.1.12 GO:0000287 ... P29254 37542031
    7 8am5:a (3.1) BS07 CLA 1.97.1.12 GO:0000287 ... P29254 37542031
    8 8am5:a (3.1) BS08 CLA 1.97.1.12 GO:0000287 ... P29254 37542031
    9 8am5:a (3.1) BS09 CLA 1.97.1.12 GO:0000287 ... P29254 37542031
    10 8am5:a (3.1) BS10 CLA 1.97.1.12 GO:0000287 ... P29254 37542031
    11 8am5:a (3.1) BS11 CLA 1.97.1.12 GO:0000287 ... P29254 37542031
    12 8am5:a (3.1) BS12 CLA 1.97.1.12 GO:0000287 ... P29254 37542031
    13 8am5:a (3.1) BS13 CLA 1.97.1.12 GO:0000287 ... P29254 37542031
    14 8am5:a (3.1) BS14 CLA 1.97.1.12 GO:0000287 ... P29254 37542031
    15 8am5:a (3.1) BS15 CLA 1.97.1.12 GO:0000287 ... P29254 37542031
    16 8am5:a (3.1) BS16 CLA 1.97.1.12 GO:0000287 ... P29254 37542031
    17 8am5:a (3.1) BS17 CLA 1.97.1.12 GO:0000287 ... P29254 37542031
    18 8am5:a (3.1) BS18 CLA 1.97.1.12 GO:0000287 ... P29254 37542031
    19 8am5:a (3.1) BS19 CLA 1.97.1.12 GO:0000287 ... P29254 37542031
    20 8am5:a (3.1) BS20 CLA 1.97.1.12 GO:0000287 ... P29254 37542031
    21 8am5:a (3.1) BS21 CLA 1.97.1.12 GO:0000287 ... P29254 37542031
    22 8am5:a (3.1) BS22 CLA 1.97.1.12 GO:0000287 ... P29254 37542031
    23 8am5:a (3.1) BS23 CLA 1.97.1.12 GO:0000287 ... P29254 37542031
    24 8am5:a (3.1) BS24 CLA 1.97.1.12 GO:0000287 ... P29254 37542031
    25 8am5:a (3.1) BS25 CLA 1.97.1.12 GO:0000287 ... P29254 37542031
    26 8am5:a (3.1) BS26 CLA 1.97.1.12 GO:0000287 ... P29254 37542031
    27 8am5:a (3.1) BS27 CLA 1.97.1.12 GO:0000287 ... P29254 37542031
    28 8am5:a (3.1) BS28 CLA 1.97.1.12 GO:0000287 ... P29254 37542031
    29 8am5:a (3.1) BS29 CLA 1.97.1.12 GO:0000287 ... P29254 37542031
    30 8am5:a (3.1) BS30 CLA 1.97.1.12 GO:0000287 ... P29254 37542031
    31 8am5:a (3.1) BS31 CLA 1.97.1.12 GO:0000287 ... P29254 37542031
    32 8am5:a (3.1) BS32 CLA 1.97.1.12 GO:0000287 ... P29254 37542031
    33 8am5:a (3.1) BS33 CLA 1.97.1.12 GO:0000287 ... P29254 37542031
    34 8am5:a (3.1) BS34 CLA 1.97.1.12 GO:0000287 ... P29254 37542031
    35 8am5:a (3.1) BS35 CLA 1.97.1.12 GO:0000287 ... P29254 37542031
    36 8am5:a (3.1) BS36 CLA 1.97.1.12 GO:0000287 ... P29254 37542031
    37 8am5:a (3.1) BS37 CLA 1.97.1.12 GO:0000287 ... P29254 37542031
    38 8am5:a (3.1) BS38 CLA 1.97.1.12 GO:0000287 ... P29254 37542031
    39 8am5:a (3.1) BS39 CLA 1.97.1.12 GO:0000287 ... P29254 37542031
    40 8am5:a (3.1) BS40 CLA 1.97.1.12 GO:0000287 ... P29254 37542031
    41 8am5:a (3.1) BS41 CLA 1.97.1.12 GO:0000287 ... P29254 37542031
    42 8am5:a (3.1) BS42 CLA 1.97.1.12 GO:0000287 ... P29254 37542031
    43 8am5:a (3.1) BS43 PQN 1.97.1.12 GO:0000287 ... P29254 37542031
    44 8am5:a (3.1) BS44 SF4 1.97.1.12 GO:0000287 ... P29254 37542031
    45 8am5:a (3.1) BS45 CLA 1.97.1.12 GO:0000287 ... P29254 37542031
    46 8am5:a (3.1) BS46 45D 1.97.1.12 GO:0000287 ... P29254 37542031
    47 8am5:a (3.1) BS47 CLA 1.97.1.12 GO:0000287 ... P29254 37542031
    48 8am5:a (3.1) BS48 CLA 1.97.1.12 GO:0000287 ... P29254 37542031
    49 8am5:a (3.1) BS49 CLA 1.97.1.12 GO:0000287 ... P29254 37542031
    50 8am5:b (3.1) BS02 CLA 1.97.1.12 GO:0000287 ... P29255 37542031
    51 8am5:b (3.1) BS03 CLA 1.97.1.12 GO:0000287 ... P29255 37542031
    52 8am5:b (3.1) BS04 CLA 1.97.1.12 GO:0000287 ... P29255 37542031
    53 8am5:b (3.1) BS05 SF4 1.97.1.12 GO:0000287 ... P29255 37542031
    54 8am5:b (3.1) BS06 CLA 1.97.1.12 GO:0000287 ... P29255 37542031
    55 8am5:b (3.1) BS07 CLA 1.97.1.12 GO:0000287 ... P29255 37542031
    56 8am5:f (3.1) BS01 CLA ? GO:0009522 ... P29256 37542031
    57 8am5:j (3.1) BS01 CLA ? GO:0009522 ... Q55329 37542031
    58 8am5:k (3.1) BS01 CLA ? GO:0009522 ... P72712 37542031
    59 8am5:k (3.1) BS02 CLA ? GO:0009522 ... P72712 37542031
    60 8am5:k (3.1) BS03 CLA ? GO:0009522 ... P72712 37542031
    61 8am5:k (3.1) BS04 CLA ? GO:0009522 ... P72712 37542031
    62 8am5:l (3.1) BS01 CLA ? GO:0005886 ... P37277 37542031
    63 8am5:l (3.1) BS02 CLA ? GO:0005886 ... P37277 37542031
    64 8am5:l (3.1) BS03 CLA ? GO:0005886 ... P37277 37542031
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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