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BioLiP
Download all results in tab-seperated text for 20 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7y8a:3 (2.71) BS19 CLA N/A GO:0009765 ... N/A 36943796
    2 7y8a:3 (2.71) BS20 CLA N/A GO:0009765 ... N/A 36943796
    3 7y8a:4 (2.71) BS18 CLA N/A GO:0009765 ... N/A 36943796
    4 7y8a:Z (2.71) BS01 CLA N/A N/A N/A 36943796
    5 7y8a:Z (2.71) BS02 CLA N/A N/A N/A 36943796
    6 7y8a:Z (2.71) BS03 CLA N/A N/A N/A 36943796
    7 7y8a:Z (2.71) BS04 CLA N/A N/A N/A 36943796
    8 7y8a:Z (2.71) BS05 CLA N/A N/A N/A 36943796
    9 7y8a:Z (2.71) BS06 CLA N/A N/A N/A 36943796
    10 7y8a:Z (2.71) BS07 CLA N/A N/A N/A 36943796
    11 7y8a:Z (2.71) BS08 KC2 N/A N/A N/A 36943796
    12 7y8a:Z (2.71) BS09 8CT N/A N/A N/A 36943796
    13 7y8a:Z (2.71) BS10 8CT N/A N/A N/A 36943796
    14 7y8a:Z (2.71) BS11 CLA N/A N/A N/A 36943796
    15 7y8a:Z (2.71) BS12 CLA N/A N/A N/A 36943796
    16 7y8a:Z (2.71) BS13 CLA N/A N/A N/A 36943796
    17 7y8a:Z (2.71) BS14 CLA N/A N/A N/A 36943796
    18 7y8a:a (2.71) BS02 CLA N/A GO:0009765 ... N/A 36943796
    19 7y8a:a (2.71) BS03 II0 N/A GO:0009765 ... N/A 36943796
    20 7y8a:b (2.71) BS02 II0 N/A GO:0009765 ... N/A 36943796
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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