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BioLiP
Download all results in tab-seperated text for 20 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 8bd3:C (2.73) BS15 CLA ? GO:0005737 ... A0A076EAP1 37566050
    2 8bd3:G (2.73) BS18 CHL ? GO:0009765 ... A0A2P6TDA6 37566050
    3 8bd3:N (2.73) BS17 CHL N/A GO:0009765 ... N/A 37566050
    4 8bd3:W (2.73) BS01 CLA N/A GO:0009507 ... N/A 37566050
    5 8bd3:Y (2.73) BS01 CHL 2.7.1.107 GO:0009765 ... A0A2P6U5M3 37566050
    6 8bd3:Y (2.73) BS02 CLA 2.7.1.107 GO:0009765 ... A0A2P6U5M3 37566050
    7 8bd3:Y (2.73) BS03 CHL 2.7.1.107 GO:0009765 ... A0A2P6U5M3 37566050
    8 8bd3:Y (2.73) BS04 CHL 2.7.1.107 GO:0009765 ... A0A2P6U5M3 37566050
    9 8bd3:Y (2.73) BS05 CLA 2.7.1.107 GO:0009765 ... A0A2P6U5M3 37566050
    10 8bd3:Y (2.73) BS06 CLA 2.7.1.107 GO:0009765 ... A0A2P6U5M3 37566050
    11 8bd3:Y (2.73) BS07 CLA 2.7.1.107 GO:0009765 ... A0A2P6U5M3 37566050
    12 8bd3:Y (2.73) BS08 CHL 2.7.1.107 GO:0009765 ... A0A2P6U5M3 37566050
    13 8bd3:Y (2.73) BS09 CHL 2.7.1.107 GO:0009765 ... A0A2P6U5M3 37566050
    14 8bd3:Y (2.73) BS10 CHL 2.7.1.107 GO:0009765 ... A0A2P6U5M3 37566050
    15 8bd3:Y (2.73) BS11 CHL 2.7.1.107 GO:0009765 ... A0A2P6U5M3 37566050
    16 8bd3:Y (2.73) BS12 CLA 2.7.1.107 GO:0009765 ... A0A2P6U5M3 37566050
    17 8bd3:Y (2.73) BS13 CLA 2.7.1.107 GO:0009765 ... A0A2P6U5M3 37566050
    18 8bd3:Y (2.73) BS14 CLA 2.7.1.107 GO:0009765 ... A0A2P6U5M3 37566050
    19 8bd3:Y (2.73) BS15 CLA 2.7.1.107 GO:0009765 ... A0A2P6U5M3 37566050
    20 8bd3:Y (2.73) BS16 CLA 2.7.1.107 GO:0009765 ... A0A2P6U5M3 37566050
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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