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BioLiP
Download all results in tab-seperated text for 17 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7pnk:G (3.61) BS14 CHL ? GO:0009765 ... A1XKU7 36799903
    2 7pnk:G (3.61) BS15 CHL ? GO:0009765 ... A1XKU7 36799903
    3 7pnk:N (3.61) BS17 CLA N/A GO:0009765 ... N/A 36799903
    4 7pnk:Y (3.61) BS01 CHL N/A GO:0009765 ... N/A 36799903
    5 7pnk:Y (3.61) BS02 CHL N/A GO:0009765 ... N/A 36799903
    6 7pnk:Y (3.61) BS03 CLA N/A GO:0009765 ... N/A 36799903
    7 7pnk:Y (3.61) BS04 CLA N/A GO:0009765 ... N/A 36799903
    8 7pnk:Y (3.61) BS05 CHL N/A GO:0009765 ... N/A 36799903
    9 7pnk:Y (3.61) BS06 CHL N/A GO:0009765 ... N/A 36799903
    10 7pnk:Y (3.61) BS07 CHL N/A GO:0009765 ... N/A 36799903
    11 7pnk:Y (3.61) BS08 CLA N/A GO:0009765 ... N/A 36799903
    12 7pnk:Y (3.61) BS09 CHL N/A GO:0009765 ... N/A 36799903
    13 7pnk:Y (3.61) BS10 CLA N/A GO:0009765 ... N/A 36799903
    14 7pnk:Y (3.61) BS11 CLA N/A GO:0009765 ... N/A 36799903
    15 7pnk:Y (3.61) BS12 CLA N/A GO:0009765 ... N/A 36799903
    16 7pnk:Y (3.61) BS13 CLA N/A GO:0009765 ... N/A 36799903
    17 7pnk:Y (3.61) BS14 CLA N/A GO:0009765 ... N/A 36799903
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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