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BioLiP
Download all results in tab-seperated text for 2 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • The sequence is converted from residues with experimentally determined coordinates in the structure; residues not observed in the 3D structure are excluded.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (resolution)     		Site
    #     		Peptide
    sequence         		EC
    number     		GO
    terms     		UniProt PubMed Binding
    affinity
    1 7rf7:K
    (2.09)    		 BS01 >7rf7:Y (identical to 7d1t:Y, 7d1t:y, 7d1u:Y, 7d1u:y, 6dhe:Y, 6dhf:Y, 6dhg:Y, 6dhh:Y, 6dho:Y, 6dhp:Y, 7eda:Y, 9evx:Y, 9evx:y, 8ez5:Y, 8f4c:Y, 8f4d:Y, 8f4e:Y, 8f4f:Y, 8f4g:Y, 8f4h:Y, 8f4i:Y, 8f4j:Y, 8f4k:Y, 5kai:Y, 7rf1:Y, 7rf2:Y, 7rf3:Y, 7rf4:Y, 7rf5:Y, 7rf6:Y, 7rf8:Y, 5tis:Y, 6w1o:Y, 6w1p:Y, 6w1q:Y, 6w1r:Y, 6w1t:Y, 6w1u:Y, 6w1v:Y, 3wu2:Y)
    AQLTMIAMIGIAGPMIIFLLAVRRGNL
    		 ? GO:0005737 ... Q9F1K9 34764256
    2 7rf7:Z
    (2.09)    		 BS01 >7rf7:Y (identical to 7d1t:Y, 7d1t:y, 7d1u:Y, 7d1u:y, 6dhe:Y, 6dhf:Y, 6dhg:Y, 6dhh:Y, 6dho:Y, 6dhp:Y, 7eda:Y, 9evx:Y, 9evx:y, 8ez5:Y, 8f4c:Y, 8f4d:Y, 8f4e:Y, 8f4f:Y, 8f4g:Y, 8f4h:Y, 8f4i:Y, 8f4j:Y, 8f4k:Y, 5kai:Y, 7rf1:Y, 7rf2:Y, 7rf3:Y, 7rf4:Y, 7rf5:Y, 7rf6:Y, 7rf8:Y, 5tis:Y, 6w1o:Y, 6w1p:Y, 6w1q:Y, 6w1r:Y, 6w1t:Y, 6w1u:Y, 6w1v:Y, 3wu2:Y)
    AQLTMIAMIGIAGPMIIFLLAVRRGNL
    		 ? GO:0009523 ... Q8DHJ2 34764256
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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