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BioLiP
Download all results in tab-seperated text for 6 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • The sequence is converted from residues with experimentally determined coordinates in the structure; residues not observed in the 3D structure are excluded.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (resolution)     		Site
    #     		DNA
    sequence         		EC
    number     		GO
    terms     		UniProt PubMed Binding
    affinity
    1 8eaf:A
    (2.62)    		 BS01 >8eaf:X (identical to 6bhx:E, 8d4a:D, 8eah:X, 8eaj:X, 8eal:X, 6fwr:B, 6fws:C, 8gme:P, 6jdg:F, 4js5:C, 4pog:Y, 8u3k:G, 7xf1:B, 6xtx:M)
    ttttttttttt
    		 3.6.4.12 GO:0003677 ... Q9UXG1 36499022
    2 8eaf:B
    (2.62)    		 BS01 >8eaf:X (identical to 6bhx:E, 8d4a:D, 8eah:X, 8eaj:X, 8eal:X, 6fwr:B, 6fws:C, 8gme:P, 6jdg:F, 4js5:C, 4pog:Y, 8u3k:G, 7xf1:B, 6xtx:M)
    ttttttttttt
    		 3.6.4.12 GO:0003677 ... Q9UXG1 36499022
    3 8eaf:C
    (2.62)    		 BS01 >8eaf:X (identical to 6bhx:E, 8d4a:D, 8eah:X, 8eaj:X, 8eal:X, 6fwr:B, 6fws:C, 8gme:P, 6jdg:F, 4js5:C, 4pog:Y, 8u3k:G, 7xf1:B, 6xtx:M)
    ttttttttttt
    		 3.6.4.12 GO:0003677 ... Q9UXG1 36499022
    4 8eaf:D
    (2.62)    		 BS01 >8eaf:X (identical to 6bhx:E, 8d4a:D, 8eah:X, 8eaj:X, 8eal:X, 6fwr:B, 6fws:C, 8gme:P, 6jdg:F, 4js5:C, 4pog:Y, 8u3k:G, 7xf1:B, 6xtx:M)
    ttttttttttt
    		 3.6.4.12 GO:0003677 ... Q9UXG1 36499022
    5 8eaf:E
    (2.62)    		 BS01 >8eaf:X (identical to 6bhx:E, 8d4a:D, 8eah:X, 8eaj:X, 8eal:X, 6fwr:B, 6fws:C, 8gme:P, 6jdg:F, 4js5:C, 4pog:Y, 8u3k:G, 7xf1:B, 6xtx:M)
    ttttttttttt
    		 3.6.4.12 GO:0003677 ... Q9UXG1 36499022
    6 8eaf:F
    (2.62)    		 BS01 >8eaf:X (identical to 6bhx:E, 8d4a:D, 8eah:X, 8eaj:X, 8eal:X, 6fwr:B, 6fws:C, 8gme:P, 6jdg:F, 4js5:C, 4pog:Y, 8u3k:G, 7xf1:B, 6xtx:M)
    ttttttttttt
    		 3.6.4.12 GO:0003677 ... Q9UXG1 36499022
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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