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BioLiP
Download all results in tab-seperated text for 11 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • The sequence is converted from residues with experimentally determined coordinates in the structure; residues not observed in the 3D structure are excluded.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (resolution)     		Site
    #     		RNA
    sequence         		EC
    number     		GO
    terms     		UniProt PubMed Binding
    affinity
    1 1gtf:L
    (1.75)    		 BS01 >1gtf:W (identical to 5eeu:W, 5eev:W, 5eew:W, 5eex:W, 5eey:W, 5eez:W, 5ef0:W, 5ef1:W, 5ef2:W, 5ef3:W)
    gagugagugagugagugagugagugagugagugagugagugagu
............................................
    		 ? GO:0003723 ... Q9X6J6 11914485
    2 1gtf:M
    (1.75)    		 BS01 >1gtf:W (identical to 5eeu:W, 5eev:W, 5eew:W, 5eex:W, 5eey:W, 5eez:W, 5ef0:W, 5ef1:W, 5ef2:W, 5ef3:W)
    gagugagugagugagugagugagugagugagugagugagugagu
............................................
    		 ? GO:0003723 ... Q9X6J6 11914485
    3 1gtf:N
    (1.75)    		 BS01 >1gtf:W (identical to 5eeu:W, 5eev:W, 5eew:W, 5eex:W, 5eey:W, 5eez:W, 5ef0:W, 5ef1:W, 5ef2:W, 5ef3:W)
    gagugagugagugagugagugagugagugagugagugagugagu
............................................
    		 ? GO:0003723 ... Q9X6J6 11914485
    4 1gtf:O
    (1.75)    		 BS01 >1gtf:W (identical to 5eeu:W, 5eev:W, 5eew:W, 5eex:W, 5eey:W, 5eez:W, 5ef0:W, 5ef1:W, 5ef2:W, 5ef3:W)
    gagugagugagugagugagugagugagugagugagugagugagu
............................................
    		 ? GO:0003723 ... Q9X6J6 11914485
    5 1gtf:P
    (1.75)    		 BS01 >1gtf:W (identical to 5eeu:W, 5eev:W, 5eew:W, 5eex:W, 5eey:W, 5eez:W, 5ef0:W, 5ef1:W, 5ef2:W, 5ef3:W)
    gagugagugagugagugagugagugagugagugagugagugagu
............................................
    		 ? GO:0003723 ... Q9X6J6 11914485
    6 1gtf:Q
    (1.75)    		 BS01 >1gtf:W (identical to 5eeu:W, 5eev:W, 5eew:W, 5eex:W, 5eey:W, 5eez:W, 5ef0:W, 5ef1:W, 5ef2:W, 5ef3:W)
    gagugagugagugagugagugagugagugagugagugagugagu
............................................
    		 ? GO:0003723 ... Q9X6J6 11914485
    7 1gtf:R
    (1.75)    		 BS01 >1gtf:W (identical to 5eeu:W, 5eev:W, 5eew:W, 5eex:W, 5eey:W, 5eez:W, 5ef0:W, 5ef1:W, 5ef2:W, 5ef3:W)
    gagugagugagugagugagugagugagugagugagugagugagu
............................................
    		 ? GO:0003723 ... Q9X6J6 11914485
    8 1gtf:S
    (1.75)    		 BS01 >1gtf:W (identical to 5eeu:W, 5eev:W, 5eew:W, 5eex:W, 5eey:W, 5eez:W, 5ef0:W, 5ef1:W, 5ef2:W, 5ef3:W)
    gagugagugagugagugagugagugagugagugagugagugagu
............................................
    		 ? GO:0003723 ... Q9X6J6 11914485
    9 1gtf:T
    (1.75)    		 BS01 >1gtf:W (identical to 5eeu:W, 5eev:W, 5eew:W, 5eex:W, 5eey:W, 5eez:W, 5ef0:W, 5ef1:W, 5ef2:W, 5ef3:W)
    gagugagugagugagugagugagugagugagugagugagugagu
............................................
    		 ? GO:0003723 ... Q9X6J6 11914485
    10 1gtf:U
    (1.75)    		 BS01 >1gtf:W (identical to 5eeu:W, 5eev:W, 5eew:W, 5eex:W, 5eey:W, 5eez:W, 5ef0:W, 5ef1:W, 5ef2:W, 5ef3:W)
    gagugagugagugagugagugagugagugagugagugagugagu
............................................
    		 ? GO:0003723 ... Q9X6J6 11914485
    11 1gtf:V
    (1.75)    		 BS01 >1gtf:W (identical to 5eeu:W, 5eev:W, 5eew:W, 5eex:W, 5eey:W, 5eez:W, 5ef0:W, 5ef1:W, 5ef2:W, 5ef3:W)
    gagugagugagugagugagugagugagugagugagugagugagu
............................................
    		 ? GO:0003723 ... Q9X6J6 11914485
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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