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BioLiP
Download all results in tab-seperated text for 2 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • The sequence is converted from residues with experimentally determined coordinates in the structure; residues not observed in the 3D structure are excluded.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (resolution)     		Site
    #     		RNA
    sequence         		EC
    number     		GO
    terms     		UniProt PubMed Binding
    affinity
    1 7o5b:c
    (3.33)    		 BS01 >7o5b:U (identical to 3j9w:AX, 7qgu:z, 7qh4:y, 7qh4:1, 8qpp:U, 7qv1:H, 7qv3:H, 8r55:U)
    gguccgguaguucaguugguuagaaugccugccugucacgcaggaggucg
cggguucgagucccguccggaccgcca
<<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<
<<<<.......>>>>>>>>>>>>....
    		 ? GO:0000049 ... P12877 35217658
    2 7o5b:u
    (3.33)    		 BS01 >7o5b:U (identical to 3j9w:AX, 7qgu:z, 7qh4:y, 7qh4:1, 8qpp:U, 7qv1:H, 7qv3:H, 8r55:U)
    gguccgguaguucaguugguuagaaugccugccugucacgcaggaggucg
cggguucgagucccguccggaccgcca
<<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<
<<<<.......>>>>>>>>>>>>....
    		 ? GO:0003735 ... P05657 35217658
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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