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BioLiP
Download all results in tab-seperated text for 1 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • The sequence is converted from residues with experimentally determined coordinates in the structure; residues not observed in the 3D structure are excluded.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (resolution)     		Site
    #     		DNA
    sequence         		EC
    number     		GO
    terms     		UniProt PubMed Binding
    affinity
    1 8vfe:A
    (2.09)    		 BS01 >8vfe:T (identical to 6bel:T, 6bem:T, 6cly:T, 6cpq:T, 6crh:T, 6ctq:T, 6ctr:T, 6ctt:T, 6ctu:T, 6ctv:T, 6ctw:T, 6ctx:T, 6cu9:T, 6cua:T, 6cub:T, 5db6:T, 5eoz:T, 4f5o:T, 4gxi:T, 4gxj:T, 4gxk:T, 4m2y:T, 4m47:T, 4mf2:T, 4mf8:T, 4mfa:T, 4mfc:T, 4mff:T, 1mq2:T, 4nlk:T, 4nln:T, 4nlz:T, 4nxz:T, 4ny8:T, 4o5c:T, 4o5e:T, 4o5k:T, 4p2h:T, 4pgq:T, 4pgx:T, 3rje:T, 3rjf:T, 3rji:T, 7s9n:T, 7s9o:T, 7s9p:T, 7s9q:T, 8vfd:T, 4ymm:T, 4ymn:T, 4ymo:T, 4yn4:T, 4z6c:T, 4z6d:T, 4z6e:T, 4z6f:T)
    ccgacgtcgcatcagc
    		 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 38634780
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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