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BioLiP
Download all results in tab-seperated text for 1 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • The sequence is converted from residues with experimentally determined coordinates in the structure; residues not observed in the 3D structure are excluded.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (resolution)
    Site
    #
    DNA
    sequence
    EC
    number
    GO
    terms
    UniProt PubMed Binding
    affinity
    1 7ktb:A
    (1.576)
    BS01 >7ktb:T (identical to 6ak9:T, 6ipf:T, 6ipg:T, 7kss:T, 7kst:T, 7ksu:T, 7ksv:T, 7ksw:T, 7ksx:T, 7ksy:T, 7kta:T, 7ktc:T, 7ktd:T, 7kte:T, 7ktf:T, 7ktg:T, 7kth:T, 7kti:T, 7ktj:T, 7ktk:T, 7ktl:T, 7ktm:T, 6vf8:T, 6vf9:T, 6vfa:T, 6vfb:T, 6vfc:T)
    cggcctacg
    2.7.7.7 GO:0003677 ... Q9NP87 33824325

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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