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BioLiP
Download all results in tab-seperated text for 4 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • The sequence is converted from residues with experimentally determined coordinates in the structure; residues not observed in the 3D structure are excluded.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (resolution)     		Site
    #     		Peptide
    sequence         		EC
    number     		GO
    terms     		UniProt PubMed Binding
    affinity
    1 6pod:B
    (4.05)    		 BS01 >6pod:S (identical to 5afq:E, 8bvw:Z, 6cce:G, 8h7g:X, 6h8k:S, 5j7o:L, 5j7u:R, 5j7u:X, 3mmv:X, 3mn6:X, 3mn6:Y, 3mn6:Z, 3mn9:X, 7nvr:Y, 7nvw:Z, 7nvy:Y, 7nvz:Y, 4phz:D, 4pi0:D, 4pi2:D, 6pp7:S, 3rfr:D, 7s4m:N, 7s4m:H, 7svr:B, 5uak:R, 6v8o:3, 6v92:3, 7vzg:H, 7vzg:h, 7vzr:H, 7vzr:h, 8xku:P, 4xwo:m, 7ypk:S, 7z34:0)
    AAAAAAAAAAAAAAAAAAA
    		 ? GO:0005524 ... P0A6H1 32108573
    2 6pod:C
    (4.05)    		 BS01 >6pod:S (identical to 5afq:E, 8bvw:Z, 6cce:G, 8h7g:X, 6h8k:S, 5j7o:L, 5j7u:R, 5j7u:X, 3mmv:X, 3mn6:X, 3mn6:Y, 3mn6:Z, 3mn9:X, 7nvr:Y, 7nvw:Z, 7nvy:Y, 7nvz:Y, 4phz:D, 4pi0:D, 4pi2:D, 6pp7:S, 3rfr:D, 7s4m:N, 7s4m:H, 7svr:B, 5uak:R, 6v8o:3, 6v92:3, 7vzg:H, 7vzg:h, 7vzr:H, 7vzr:h, 8xku:P, 4xwo:m, 7ypk:S, 7z34:0)
    AAAAAAAAAAAAAAAAAAA
    		 ? GO:0005524 ... P0A6H1 32108573
    3 6pod:D
    (4.05)    		 BS01 >6pod:S (identical to 5afq:E, 8bvw:Z, 6cce:G, 8h7g:X, 6h8k:S, 5j7o:L, 5j7u:R, 5j7u:X, 3mmv:X, 3mn6:X, 3mn6:Y, 3mn6:Z, 3mn9:X, 7nvr:Y, 7nvw:Z, 7nvy:Y, 7nvz:Y, 4phz:D, 4pi0:D, 4pi2:D, 6pp7:S, 3rfr:D, 7s4m:N, 7s4m:H, 7svr:B, 5uak:R, 6v8o:3, 6v92:3, 7vzg:H, 7vzg:h, 7vzr:H, 7vzr:h, 8xku:P, 4xwo:m, 7ypk:S, 7z34:0)
    AAAAAAAAAAAAAAAAAAA
    		 ? GO:0005524 ... P0A6H1 32108573
    4 6pod:E
    (4.05)    		 BS01 >6pod:S (identical to 5afq:E, 8bvw:Z, 6cce:G, 8h7g:X, 6h8k:S, 5j7o:L, 5j7u:R, 5j7u:X, 3mmv:X, 3mn6:X, 3mn6:Y, 3mn6:Z, 3mn9:X, 7nvr:Y, 7nvw:Z, 7nvy:Y, 7nvz:Y, 4phz:D, 4pi0:D, 4pi2:D, 6pp7:S, 3rfr:D, 7s4m:N, 7s4m:H, 7svr:B, 5uak:R, 6v8o:3, 6v92:3, 7vzg:H, 7vzg:h, 7vzr:H, 7vzr:h, 8xku:P, 4xwo:m, 7ypk:S, 7z34:0)
    AAAAAAAAAAAAAAAAAAA
    		 ? GO:0005524 ... P0A6H1 32108573
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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