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BioLiP
Download all results in tab-seperated text for 10 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • The sequence is converted from residues with experimentally determined coordinates in the structure; residues not observed in the 3D structure are excluded.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (resolution)     		Site
    #     		DNA
    sequence         		EC
    number     		GO
    terms     		UniProt PubMed Binding
    affinity
    1 7xvm:K
    (2.84)    		 BS01 >7xvm:S (identical to 6lab:I, 6lab:S, 7xvm:I, 7xx5:I, 7xx5:S, 7xx6:I, 7xx6:S, 7xx6:c, 7xx6:m, 7xx7:I, 7xx7:S, 8yti:I, 8yti:S)
    gcttttttttttcacaatcccggtgccgaggccgctcaattggtcgtaga
cagctctagcaccgcttaaacgcacgtacggaatccgtacgtgcgtttaa
gcggtgctagagctgtctacgaccaattgagcggcctcggcaccgggatt
gtgaaaaaaaaaagctgca
    		 ? GO:0000786 ... P68431 N/A
    2 7xvm:L
    (2.84)    		 BS01 >7xvm:S (identical to 6lab:I, 6lab:S, 7xvm:I, 7xx5:I, 7xx5:S, 7xx6:I, 7xx6:S, 7xx6:c, 7xx6:m, 7xx7:I, 7xx7:S, 8yti:I, 8yti:S)
    gcttttttttttcacaatcccggtgccgaggccgctcaattggtcgtaga
cagctctagcaccgcttaaacgcacgtacggaatccgtacgtgcgtttaa
gcggtgctagagctgtctacgaccaattgagcggcctcggcaccgggatt
gtgaaaaaaaaaagctgca
    		 ? GO:0000781 ... P62805 N/A
    3 7xvm:M
    (2.84)    		 BS01 >7xvm:S (identical to 6lab:I, 6lab:S, 7xvm:I, 7xx5:I, 7xx5:S, 7xx6:I, 7xx6:S, 7xx6:c, 7xx6:m, 7xx7:I, 7xx7:S, 8yti:I, 8yti:S)
    gcttttttttttcacaatcccggtgccgaggccgctcaattggtcgtaga
cagctctagcaccgcttaaacgcacgtacggaatccgtacgtgcgtttaa
gcggtgctagagctgtctacgaccaattgagcggcctcggcaccgggatt
gtgaaaaaaaaaagctgca
    		 ? GO:0000786 ... P04908 N/A
    4 7xvm:N
    (2.84)    		 BS01 >7xvm:S (identical to 6lab:I, 6lab:S, 7xvm:I, 7xx5:I, 7xx5:S, 7xx6:I, 7xx6:S, 7xx6:c, 7xx6:m, 7xx7:I, 7xx7:S, 8yti:I, 8yti:S)
    gcttttttttttcacaatcccggtgccgaggccgctcaattggtcgtaga
cagctctagcaccgcttaaacgcacgtacggaatccgtacgtgcgtttaa
gcggtgctagagctgtctacgaccaattgagcggcctcggcaccgggatt
gtgaaaaaaaaaagctgca
    		 ? GO:0000786 ... P06899 N/A
    5 7xvm:O
    (2.84)    		 BS01 >7xvm:S (identical to 6lab:I, 6lab:S, 7xvm:I, 7xx5:I, 7xx5:S, 7xx6:I, 7xx6:S, 7xx6:c, 7xx6:m, 7xx7:I, 7xx7:S, 8yti:I, 8yti:S)
    gcttttttttttcacaatcccggtgccgaggccgctcaattggtcgtaga
cagctctagcaccgcttaaacgcacgtacggaatccgtacgtgcgtttaa
gcggtgctagagctgtctacgaccaattgagcggcctcggcaccgggatt
gtgaaaaaaaaaagctgca
    		 ? GO:0000786 ... P68431 N/A
    6 7xvm:P
    (2.84)    		 BS01 >7xvm:S (identical to 6lab:I, 6lab:S, 7xvm:I, 7xx5:I, 7xx5:S, 7xx6:I, 7xx6:S, 7xx6:c, 7xx6:m, 7xx7:I, 7xx7:S, 8yti:I, 8yti:S)
    gcttttttttttcacaatcccggtgccgaggccgctcaattggtcgtaga
cagctctagcaccgcttaaacgcacgtacggaatccgtacgtgcgtttaa
gcggtgctagagctgtctacgaccaattgagcggcctcggcaccgggatt
gtgaaaaaaaaaagctgca
    		 ? GO:0000781 ... P62805 N/A
    7 7xvm:Q
    (2.84)    		 BS01 >7xvm:S (identical to 6lab:I, 6lab:S, 7xvm:I, 7xx5:I, 7xx5:S, 7xx6:I, 7xx6:S, 7xx6:c, 7xx6:m, 7xx7:I, 7xx7:S, 8yti:I, 8yti:S)
    gcttttttttttcacaatcccggtgccgaggccgctcaattggtcgtaga
cagctctagcaccgcttaaacgcacgtacggaatccgtacgtgcgtttaa
gcggtgctagagctgtctacgaccaattgagcggcctcggcaccgggatt
gtgaaaaaaaaaagctgca
    		 ? GO:0000786 ... P04908 N/A
    8 7xvm:R
    (2.84)    		 BS01 >7xvm:S (identical to 6lab:I, 6lab:S, 7xvm:I, 7xx5:I, 7xx5:S, 7xx6:I, 7xx6:S, 7xx6:c, 7xx6:m, 7xx7:I, 7xx7:S, 8yti:I, 8yti:S)
    gcttttttttttcacaatcccggtgccgaggccgctcaattggtcgtaga
cagctctagcaccgcttaaacgcacgtacggaatccgtacgtgcgtttaa
gcggtgctagagctgtctacgaccaattgagcggcctcggcaccgggatt
gtgaaaaaaaaaagctgca
    		 ? GO:0000786 ... P06899 N/A
    9 7xvm:U
    (2.84)    		 BS03 >7xvm:S (identical to 6lab:I, 6lab:S, 7xvm:I, 7xx5:I, 7xx5:S, 7xx6:I, 7xx6:S, 7xx6:c, 7xx6:m, 7xx7:I, 7xx7:S, 8yti:I, 8yti:S)
    gcttttttttttcacaatcccggtgccgaggccgctcaattggtcgtaga
cagctctagcaccgcttaaacgcacgtacggaatccgtacgtgcgtttaa
gcggtgctagagctgtctacgaccaattgagcggcctcggcaccgggatt
gtgaaaaaaaaaagctgca
    		 ? GO:0000786 ... P02259 N/A
    10 7xvm:V
    (2.84)    		 BS01 >7xvm:S (identical to 6lab:I, 6lab:S, 7xvm:I, 7xx5:I, 7xx5:S, 7xx6:I, 7xx6:S, 7xx6:c, 7xx6:m, 7xx7:I, 7xx7:S, 8yti:I, 8yti:S)
    gcttttttttttcacaatcccggtgccgaggccgctcaattggtcgtaga
cagctctagcaccgcttaaacgcacgtacggaatccgtacgtgcgtttaa
gcggtgctagagctgtctacgaccaattgagcggcctcggcaccgggatt
gtgaaaaaaaaaagctgca
    		 ? GO:0000786 ... P02259 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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