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BioLiP
Download all results in tab-seperated text for 2 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • The sequence is converted from residues with experimentally determined coordinates in the structure; residues not observed in the 3D structure are excluded.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (resolution)     		Site
    #     		Peptide
    sequence         		EC
    number     		GO
    terms     		UniProt PubMed Binding
    affinity
    1 7pdz:K
    (3.8)    		 BS01 >7pdz:Q (identical to 7ad9:O, 7ad9:P, 7ad9:Q, 7ad9:R, 7ad9:S, 7bti:X, 7bti:Y, 7bti:Z, 6d8c:N, 6d8c:O, 6d8c:P, 7pdz:R, 7pdz:S, 7pdz:T, 7pdz:P, 6w17:M, 6w17:N, 6w17:O, 6w17:P, 6w17:Q)
    PAWLATC
    		 3.6.4.- GO:0005515 ... P60712 34504078
    2 7pdz:L
    (3.8)    		 BS01 >7pdz:Q (identical to 7ad9:O, 7ad9:P, 7ad9:Q, 7ad9:R, 7ad9:S, 7bti:X, 7bti:Y, 7bti:Z, 6d8c:N, 6d8c:O, 6d8c:P, 7pdz:R, 7pdz:S, 7pdz:T, 7pdz:P, 6w17:M, 6w17:N, 6w17:O, 6w17:P, 6w17:Q)
    PAWLATC
    		 3.6.4.- GO:0005515 ... P60712 34504078
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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