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BioLiP
Download all results in tab-seperated text for 2 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • The sequence is converted from residues with experimentally determined coordinates in the structure; residues not observed in the 3D structure are excluded.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (resolution)     		Site
    #     		RNA
    sequence         		EC
    number     		GO
    terms     		UniProt PubMed Binding
    affinity
    1 6yud:E
    (1.84)    		 BS02 >6yud:P (identical to 8b0r:B, 4ba2:R, 8bao:C, 7bdv:F, 7bdv:H, 7did:C, 5e02:C, 8g90:B, 8g91:B, 4hot:X, 8jh1:C, 4lj0:C, 4lj0:D, 6o6v:C, 6o6v:D, 6o6x:C, 6o6x:D, 6o7b:C, 6o7b:D, 6o7h:K, 6o7i:I, 6ov0:E, 6ov0:H, 8phj:Z, 8q3z:X, 8q40:X, 8q41:X, 8q42:X, 8q43:X, 8q44:X, 8qjk:C, 3qsu:R, 3qsu:P, 6r7b:D, 6r9r:D, 6sce:B, 6scf:K, 6scf:I, 6scf:L, 6scf:M, 7sos:B, 7sov:B, 8t65:C, 5udk:B, 6w11:C, 5w5i:B, 5w5i:D, 6wxq:E, 6wxx:Y, 6wxx:X, 6xl1:C, 8y7g:C, 7ygh:C, 7ygl:C, 6yud:K, 6yud:M, 6yud:O, 6yud:Q, 7z55:CCC)
    aaaa
....
    		 ? N/A O28415 32597755
    2 6yud:F
    (1.84)    		 BS01 >6yud:P (identical to 8b0r:B, 4ba2:R, 8bao:C, 7bdv:F, 7bdv:H, 7did:C, 5e02:C, 8g90:B, 8g91:B, 4hot:X, 8jh1:C, 4lj0:C, 4lj0:D, 6o6v:C, 6o6v:D, 6o6x:C, 6o6x:D, 6o7b:C, 6o7b:D, 6o7h:K, 6o7i:I, 6ov0:E, 6ov0:H, 8phj:Z, 8q3z:X, 8q40:X, 8q41:X, 8q42:X, 8q43:X, 8q44:X, 8qjk:C, 3qsu:R, 3qsu:P, 6r7b:D, 6r9r:D, 6sce:B, 6scf:K, 6scf:I, 6scf:L, 6scf:M, 7sos:B, 7sov:B, 8t65:C, 5udk:B, 6w11:C, 5w5i:B, 5w5i:D, 6wxq:E, 6wxx:Y, 6wxx:X, 6xl1:C, 8y7g:C, 7ygh:C, 7ygl:C, 6yud:K, 6yud:M, 6yud:O, 6yud:Q, 7z55:CCC)
    aaaa
....
    		 ? N/A O28415 32597755
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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