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BioLiP
Download all results in tab-seperated text for 1 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • The sequence is converted from residues with experimentally determined coordinates in the structure; residues not observed in the 3D structure are excluded.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (resolution)
    Site
    #
    DNA
    sequence
    EC
    number
    GO
    terms
    UniProt PubMed Binding
    affinity
    1 7kt2:A
    (1.499)
    BS02 >7kt2:P (identical to 7cod:P, 6ipd:P, 6ipe:P, 6ipf:P, 6ipg:P, 7kst:P, 7ksu:P, 7ksv:P, 7ksw:P, 7ksx:P, 7ksy:P, 7kt1:P, 7kt4:P, 7kt5:P, 7kt6:P, 7kt7:P, 7kt8:P, 7kt9:P, 7ktb:P, 7ktc:P, 7ktd:P, 7kte:P, 7ktf:P, 7ktg:P, 7kth:P, 7kti:P, 7ktl:P, 7ktm:P, 7ktn:P, 6vf0:P, 6vf1:P, 6vf2:P, 6vf4:P, 6vf5:P, 6vf6:P, 6vfb:P, 6vfc:P)
    cgtag
    2.7.7.7 GO:0003677 ... Q9NP87 33824325

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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