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BioLiP
Download all results in tab-seperated text for 8 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • The sequence is converted from residues with experimentally determined coordinates in the structure; residues not observed in the 3D structure are excluded.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (resolution)     		Site
    #     		DNA
    sequence         		EC
    number     		GO
    terms     		UniProt PubMed Binding
    affinity
    1 6w5m:G
    (4.6)    		 BS02 >6w5m:P (identical to 7bwd:J, 8du4:J, 6e0c:I, 4jjn:J, 6jyl:J, 6k1p:J, 7mbn:P, 3mvd:J, 6nj9:J, 6nog:J, 6nqa:J, 6pwf:I, 6pwv:P, 6pww:P, 6pwx:P, 8t3t:J, 8t3w:J, 8t3y:J, 7ud5:J, 6ugm:J, 6uh5:J, 6ven:J, 6w5i:P, 6w5n:P, 5x0x:J, 5x0y:J, 4x23:J, 4x23:T, 7xcr:J, 7xd0:J)
    atcggatgtatatatctgacacgtgcctggagactagggagtaatcccct
tggcggttaaaacgcgggggacagcgcgtacgtgcgtttaagcggtgcta
gagctgtctacgaccaattgagcggcctcggcaccgggattctcga
    		 ? GO:0000786 ... P84233 34012049
    2 6w5m:H
    (4.6)    		 BS02 >6w5m:P (identical to 7bwd:J, 8du4:J, 6e0c:I, 4jjn:J, 6jyl:J, 6k1p:J, 7mbn:P, 3mvd:J, 6nj9:J, 6nog:J, 6nqa:J, 6pwf:I, 6pwv:P, 6pww:P, 6pwx:P, 8t3t:J, 8t3w:J, 8t3y:J, 7ud5:J, 6ugm:J, 6uh5:J, 6ven:J, 6w5i:P, 6w5n:P, 5x0x:J, 5x0y:J, 4x23:J, 4x23:T, 7xcr:J, 7xd0:J)
    atcggatgtatatatctgacacgtgcctggagactagggagtaatcccct
tggcggttaaaacgcgggggacagcgcgtacgtgcgtttaagcggtgcta
gagctgtctacgaccaattgagcggcctcggcaccgggattctcga
    		 ? GO:0000786 ... P62799 34012049
    3 6w5m:I
    (4.6)    		 BS02 >6w5m:P (identical to 7bwd:J, 8du4:J, 6e0c:I, 4jjn:J, 6jyl:J, 6k1p:J, 7mbn:P, 3mvd:J, 6nj9:J, 6nog:J, 6nqa:J, 6pwf:I, 6pwv:P, 6pww:P, 6pwx:P, 8t3t:J, 8t3w:J, 8t3y:J, 7ud5:J, 6ugm:J, 6uh5:J, 6ven:J, 6w5i:P, 6w5n:P, 5x0x:J, 5x0y:J, 4x23:J, 4x23:T, 7xcr:J, 7xd0:J)
    atcggatgtatatatctgacacgtgcctggagactagggagtaatcccct
tggcggttaaaacgcgggggacagcgcgtacgtgcgtttaagcggtgcta
gagctgtctacgaccaattgagcggcctcggcaccgggattctcga
    		 ? GO:0000786 ... P06897 34012049
    4 6w5m:J
    (4.6)    		 BS02 >6w5m:P (identical to 7bwd:J, 8du4:J, 6e0c:I, 4jjn:J, 6jyl:J, 6k1p:J, 7mbn:P, 3mvd:J, 6nj9:J, 6nog:J, 6nqa:J, 6pwf:I, 6pwv:P, 6pww:P, 6pwx:P, 8t3t:J, 8t3w:J, 8t3y:J, 7ud5:J, 6ugm:J, 6uh5:J, 6ven:J, 6w5i:P, 6w5n:P, 5x0x:J, 5x0y:J, 4x23:J, 4x23:T, 7xcr:J, 7xd0:J)
    atcggatgtatatatctgacacgtgcctggagactagggagtaatcccct
tggcggttaaaacgcgggggacagcgcgtacgtgcgtttaagcggtgcta
gagctgtctacgaccaattgagcggcctcggcaccgggattctcga
    		 ? GO:0000786 ... P02281 34012049
    5 6w5m:K
    (4.6)    		 BS02 >6w5m:P (identical to 7bwd:J, 8du4:J, 6e0c:I, 4jjn:J, 6jyl:J, 6k1p:J, 7mbn:P, 3mvd:J, 6nj9:J, 6nog:J, 6nqa:J, 6pwf:I, 6pwv:P, 6pww:P, 6pwx:P, 8t3t:J, 8t3w:J, 8t3y:J, 7ud5:J, 6ugm:J, 6uh5:J, 6ven:J, 6w5i:P, 6w5n:P, 5x0x:J, 5x0y:J, 4x23:J, 4x23:T, 7xcr:J, 7xd0:J)
    atcggatgtatatatctgacacgtgcctggagactagggagtaatcccct
tggcggttaaaacgcgggggacagcgcgtacgtgcgtttaagcggtgcta
gagctgtctacgaccaattgagcggcctcggcaccgggattctcga
    		 ? GO:0000786 ... P84233 34012049
    6 6w5m:L
    (4.6)    		 BS02 >6w5m:P (identical to 7bwd:J, 8du4:J, 6e0c:I, 4jjn:J, 6jyl:J, 6k1p:J, 7mbn:P, 3mvd:J, 6nj9:J, 6nog:J, 6nqa:J, 6pwf:I, 6pwv:P, 6pww:P, 6pwx:P, 8t3t:J, 8t3w:J, 8t3y:J, 7ud5:J, 6ugm:J, 6uh5:J, 6ven:J, 6w5i:P, 6w5n:P, 5x0x:J, 5x0y:J, 4x23:J, 4x23:T, 7xcr:J, 7xd0:J)
    atcggatgtatatatctgacacgtgcctggagactagggagtaatcccct
tggcggttaaaacgcgggggacagcgcgtacgtgcgtttaagcggtgcta
gagctgtctacgaccaattgagcggcctcggcaccgggattctcga
    		 ? GO:0000786 ... P62799 34012049
    7 6w5m:M
    (4.6)    		 BS02 >6w5m:P (identical to 7bwd:J, 8du4:J, 6e0c:I, 4jjn:J, 6jyl:J, 6k1p:J, 7mbn:P, 3mvd:J, 6nj9:J, 6nog:J, 6nqa:J, 6pwf:I, 6pwv:P, 6pww:P, 6pwx:P, 8t3t:J, 8t3w:J, 8t3y:J, 7ud5:J, 6ugm:J, 6uh5:J, 6ven:J, 6w5i:P, 6w5n:P, 5x0x:J, 5x0y:J, 4x23:J, 4x23:T, 7xcr:J, 7xd0:J)
    atcggatgtatatatctgacacgtgcctggagactagggagtaatcccct
tggcggttaaaacgcgggggacagcgcgtacgtgcgtttaagcggtgcta
gagctgtctacgaccaattgagcggcctcggcaccgggattctcga
    		 ? GO:0000786 ... P06897 34012049
    8 6w5m:N
    (4.6)    		 BS02 >6w5m:P (identical to 7bwd:J, 8du4:J, 6e0c:I, 4jjn:J, 6jyl:J, 6k1p:J, 7mbn:P, 3mvd:J, 6nj9:J, 6nog:J, 6nqa:J, 6pwf:I, 6pwv:P, 6pww:P, 6pwx:P, 8t3t:J, 8t3w:J, 8t3y:J, 7ud5:J, 6ugm:J, 6uh5:J, 6ven:J, 6w5i:P, 6w5n:P, 5x0x:J, 5x0y:J, 4x23:J, 4x23:T, 7xcr:J, 7xd0:J)
    atcggatgtatatatctgacacgtgcctggagactagggagtaatcccct
tggcggttaaaacgcgggggacagcgcgtacgtgcgtttaagcggtgcta
gagctgtctacgaccaattgagcggcctcggcaccgggattctcga
    		 ? GO:0000786 ... P02281 34012049
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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