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BioLiP
Download all results in tab-seperated text for 1 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • The sequence is converted from residues with experimentally determined coordinates in the structure; residues not observed in the 3D structure are excluded.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (resolution)     		Site
    #     		DNA
    sequence         		EC
    number     		GO
    terms     		UniProt PubMed Binding
    affinity
    1 5ca7:B
    (2.522)    		 BS01 >5ca7:P (identical to 2bcv:P, 3c5f:P, 3c5f:Q, 5chg:P, 5cj7:P, 5cp2:P, 5cr0:P, 5cwr:P, 5cwr:E, 5ddm:P, 5dkw:P, 5dkw:E, 4fo6:P, 5iii:P, 5iij:P, 5iin:P, 5iio:C, 5iio:G, 5iio:K, 5iio:O, 4k4g:C, 4k4g:G, 4k4g:K, 4k4g:O, 4k4h:C, 4k4h:G, 4k4h:K, 4k4h:O, 4k4i:C, 4k4i:G, 4k4i:K, 4k4i:O, 7m07:P, 7m43:P, 7m4d:P, 7m4k:P, 3mdc:P, 3mgh:P, 3mgh:F, 2pfn:P, 2pfo:P, 2pfp:P, 3pml:F, 3pml:H, 8u0p:P, 7un7:P, 3upq:P, 4xa5:P, 4xq8:P, 4xrh:P)
    cagtac
    		 2.7.7.7
    4.2.99.-    		 GO:0003677 ... Q9UGP5 26836966
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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