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BioLiP
Download all results in tab-seperated text for 1 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • The sequence is converted from residues with experimentally determined coordinates in the structure; residues not observed in the 3D structure are excluded.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (resolution)
    Site
    #
    DNA
    sequence
    EC
    number
    GO
    terms
    UniProt PubMed Binding
    affinity
    1 4ecy:A
    (1.943)
    BS02 >4ecy:P (identical to 9chw:P, 9ciq:P, 9cj9:P, 5dg7:P, 5dg8:P, 5dg9:P, 5dga:P, 5dlf:P, 5dlg:P, 5dqg:P, 5dqh:P, 8e8a:P, 4ecq:P, 4ecr:P, 4ecz:P, 4ed0:P, 4ed1:P, 4ed2:P, 4ed3:P, 8eve:P, 5ewe:P, 5ewf:P, 5ewg:P, 5f9l:P, 5f9n:P, 4j9k:P, 5jum:P, 5kfa:P, 5kfb:P, 5kfc:P, 5kfd:P, 5kfe:P, 5kff:P, 5kfg:P, 5kfm:P, 5kfn:P, 5kfo:P, 5kfs:P, 5kft:P, 5kfu:P, 5kfv:P, 5kfy:P, 5l1j:P, 5l1l:P, 7m7t:P, 7m7u:P, 6mp3:P, 6mq8:P, 4o3n:P, 4o3o:P, 4o3p:P, 4o3q:P, 6pl7:P, 6pl8:P, 6plc:P, 4rnm:P, 4rnn:P, 4ru9:P, 3tq1:P, 7u72:P, 7u73:P, 7u74:P, 7u75:P, 7u77:P, 7u78:P, 7u7d:P, 7u7e:P, 7u7r:P, 7u7s:P, 7u7t:P, 7u7u:P, 7u7v:P, 7u7w:P, 7u7x:P, 7u7y:P, 7u7z:P, 7u80:P, 7u81:P, 7u82:P, 7u83:P, 7u84:P, 6ui2:P, 8ujt:P, 8ujv:P, 8ujx:P, 8uk4:P, 6uqi:P, 8v7a:P, 8v7b:P, 8v7c:P, 8v7d:P, 4yp3:P, 4yqw:P, 4yr0:P, 4yr2:P, 4yr3:P)
    agcgtcat
    2.7.7.7 GO:0003684 ... Q9Y253 22785315

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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