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BioLiP
Download all results in tab-seperated text for 13 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 8wmj:B (3.0) BS56 CLA 1.97.1.12 GO:0000287 ... A6MVZ6 38734819
    2 8wmj:I (3.0) BS05 WVN ? GO:0009507 ... A6MVV1 38734819
    3 8wmj:L (3.0) BS01 CLA ? GO:0009507 ... A6MVV8 38734819
    4 8wmj:L (3.0) BS02 CLA ? GO:0009507 ... A6MVV8 38734819
    5 8wmj:L (3.0) BS03 CLA ? GO:0009507 ... A6MVV8 38734819
    6 8wmj:L (3.0) BS04 CLA ? GO:0009507 ... A6MVV8 38734819
    7 8wmj:L (3.0) BS05 CLA ? GO:0009507 ... A6MVV8 38734819
    8 8wmj:L (3.0) BS06 WVN ? GO:0009507 ... A6MVV8 38734819
    9 8wmj:L (3.0) BS07 CLA ? GO:0009507 ... A6MVV8 38734819
    10 8wmj:L (3.0) BS08 CLA ? GO:0009507 ... A6MVV8 38734819
    11 8wmj:L (3.0) BS09 CLA ? GO:0009507 ... A6MVV8 38734819
    12 8wmj:L (3.0) BS10 WVN ? GO:0009507 ... A6MVV8 38734819
    13 8wmj:L (3.0) BS11 CLA ? GO:0009507 ... A6MVV8 38734819
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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