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BioLiP
Download all results in tab-seperated text for 15 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6vpv:A (2.7) BS53 CLA 1.97.1.12 GO:0000287 ... K9Z0B2 34435952
    2 6vpv:A (2.7) BS54 CLA 1.97.1.12 GO:0000287 ... K9Z0B2 34435952
    3 6vpv:B (2.7) BS51 CLA 1.97.1.12 GO:0000287 ... K9Z2J7 34435952
    4 6vpv:B (2.7) BS52 CLA 1.97.1.12 GO:0000287 ... K9Z2J7 34435952
    5 6vpv:L (2.7) BS01 CLA ? GO:0009522 ... K9Z7Y0 34435952
    6 6vpv:L (2.7) BS02 CLA ? GO:0009522 ... K9Z7Y0 34435952
    7 6vpv:L (2.7) BS03 CLA ? GO:0009522 ... K9Z7Y0 34435952
    8 6vpv:L (2.7) BS04 CLA ? GO:0009522 ... K9Z7Y0 34435952
    9 6vpv:L (2.7) BS05 CLA ? GO:0009522 ... K9Z7Y0 34435952
    10 6vpv:L (2.7) BS06 CLA ? GO:0009522 ... K9Z7Y0 34435952
    11 6vpv:L (2.7) BS07 CLA ? GO:0009522 ... K9Z7Y0 34435952
    12 6vpv:L (2.7) BS08 CLA ? GO:0009522 ... K9Z7Y0 34435952
    13 6vpv:L (2.7) BS09 CLA ? GO:0009522 ... K9Z7Y0 34435952
    14 6vpv:L (2.7) BS10 CLA ? GO:0009522 ... K9Z7Y0 34435952
    15 6vpv:l (2.7) BS01 CLA ? GO:0009522 ... K9Z7Y0 34435952
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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