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BioLiP
Download all results in tab-seperated text for 16 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • The sequence is converted from residues with experimentally determined coordinates in the structure; residues not observed in the 3D structure are excluded.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (resolution)     		Site
    #     		RNA
    sequence         		EC
    number     		GO
    terms     		UniProt PubMed Binding
    affinity
    1 6j6n:A
    (3.86)    		 BS05 >6j6n:L
    acgaaucucuuugccuuuuggcuuagaucaaguguaguaucuguucagug
uaacaacuaaugaccucagaggcucauauuuguuacaauacacauuuuuu
ggcacccaaaauaggacgggaagagacuuuuaaagugagacgucgcgacc
cucgcaggagucguucuugacuuuuuggucgcuugauguuucucucuucc
cguuc
................................................<<
<<<<<<..<..<.<<<<.>>>>.>..>..>>>>>>>>.............
..............<<<<<<<<<<.<<<<<.>>>>><<<<<<<<<<<<.<
<......<<<<<<....>>>>>>...>>>>>>..>>>>>>>>..>>>>>>
>>>>.
    		 ? GO:0000244 ... P33334 30879786
    2 6j6n:I
    (3.86)    		 BS02 >6j6n:L
    acgaaucucuuugccuuuuggcuuagaucaaguguaguaucuguucagug
uaacaacuaaugaccucagaggcucauauuuguuacaauacacauuuuuu
ggcacccaaaauaggacgggaagagacuuuuaaagugagacgucgcgacc
cucgcaggagucguucuugacuuuuuggucgcuugauguuucucucuucc
cguuc
................................................<<
<<<<<<..<..<.<<<<.>>>>.>..>..>>>>>>>>.............
..............<<<<<<<<<<.<<<<<.>>>>><<<<<<<<<<<<.<
<......<<<<<<....>>>>>>...>>>>>>..>>>>>>>>..>>>>>>
>>>>.
    		 ? GO:0000384 ... P53277 30879786
    3 6j6n:P
    (3.86)    		 BS03 >6j6n:L
    acgaaucucuuugccuuuuggcuuagaucaaguguaguaucuguucagug
uaacaacuaaugaccucagaggcucauauuuguuacaauacacauuuuuu
ggcacccaaaauaggacgggaagagacuuuuaaagugagacgucgcgacc
cucgcaggagucguucuugacuuuuuggucgcuugauguuucucucuucc
cguuc
................................................<<
<<<<<<..<..<.<<<<.>>>>.>..>..>>>>>>>>.............
..............<<<<<<<<<<.<<<<<.>>>>><<<<<<<<<<<<.<
<......<<<<<<....>>>>>>...>>>>>>..>>>>>>>>..>>>>>>
>>>>.
    		 ? GO:0000350 ... P28004 30879786
    4 6j6n:Q
    (3.86)    		 BS02 >6j6n:L
    acgaaucucuuugccuuuuggcuuagaucaaguguaguaucuguucagug
uaacaacuaaugaccucagaggcucauauuuguuacaauacacauuuuuu
ggcacccaaaauaggacgggaagagacuuuuaaagugagacgucgcgacc
cucgcaggagucguucuugacuuuuuggucgcuugauguuucucucuucc
cguuc
................................................<<
<<<<<<..<..<.<<<<.>>>>.>..>..>>>>>>>>.............
..............<<<<<<<<<<.<<<<<.>>>>><<<<<<<<<<<<.<
<......<<<<<<....>>>>>>...>>>>>>..>>>>>>>>..>>>>>>
>>>>.
    		 ? GO:0000398 ... P38241 30879786
    5 6j6n:R
    (3.86)    		 BS03 >6j6n:L
    acgaaucucuuugccuuuuggcuuagaucaaguguaguaucuguucagug
uaacaacuaaugaccucagaggcucauauuuguuacaauacacauuuuuu
ggcacccaaaauaggacgggaagagacuuuuaaagugagacgucgcgacc
cucgcaggagucguucuugacuuuuuggucgcuugauguuucucucuucc
cguuc
................................................<<
<<<<<<..<..<.<<<<.>>>>.>..>..>>>>>>>>.............
..............<<<<<<<<<<.<<<<<.>>>>><<<<<<<<<<<<.<
<......<<<<<<....>>>>>>...>>>>>>..>>>>>>>>..>>>>>>
>>>>.
    		 ? GO:0000387 ... Q12046 30879786
    6 6j6n:S
    (3.86)    		 BS03 >6j6n:L
    acgaaucucuuugccuuuuggcuuagaucaaguguaguaucuguucagug
uaacaacuaaugaccucagaggcucauauuuguuacaauacacauuuuuu
ggcacccaaaauaggacgggaagagacuuuuaaagugagacgucgcgacc
cucgcaggagucguucuugacuuuuuggucgcuugauguuucucucuucc
cguuc
................................................<<
<<<<<<..<..<.<<<<.>>>>.>..>..>>>>>>>>.............
..............<<<<<<<<<<.<<<<<.>>>>><<<<<<<<<<<<.<
<......<<<<<<....>>>>>>...>>>>>>..>>>>>>>>..>>>>>>
>>>>.
    		 ? GO:0000398 ... Q03772 30879786
    7 6j6n:a
    (3.86)    		 BS01 >6j6n:L
    acgaaucucuuugccuuuuggcuuagaucaaguguaguaucuguucagug
uaacaacuaaugaccucagaggcucauauuuguuacaauacacauuuuuu
ggcacccaaaauaggacgggaagagacuuuuaaagugagacgucgcgacc
cucgcaggagucguucuugacuuuuuggucgcuugauguuucucucuucc
cguuc
................................................<<
<<<<<<..<..<.<<<<.>>>>.>..>..>>>>>>>>.............
..............<<<<<<<<<<.<<<<<.>>>>><<<<<<<<<<<<.<
<......<<<<<<....>>>>>>...>>>>>>..>>>>>>>>..>>>>>>
>>>>.
    		 ? GO:0000398 ... P40567 30879786
    8 6j6n:c
    (3.86)    		 BS02 >6j6n:L
    acgaaucucuuugccuuuuggcuuagaucaaguguaguaucuguucagug
uaacaacuaaugaccucagaggcucauauuuguuacaauacacauuuuuu
ggcacccaaaauaggacgggaagagacuuuuaaagugagacgucgcgacc
cucgcaggagucguucuugacuuuuuggucgcuugauguuucucucuucc
cguuc
................................................<<
<<<<<<..<..<.<<<<.>>>>.>..>..>>>>>>>>.............
..............<<<<<<<<<<.<<<<<.>>>>><<<<<<<<<<<<.<
<......<<<<<<....>>>>>>...>>>>>>..>>>>>>>>..>>>>>>
>>>>.
    		 ? GO:0000350 ... Q03654 30879786
    9 6j6n:e
    (3.86)    		 BS01 >6j6n:L
    acgaaucucuuugccuuuuggcuuagaucaaguguaguaucuguucagug
uaacaacuaaugaccucagaggcucauauuuguuacaauacacauuuuuu
ggcacccaaaauaggacgggaagagacuuuuaaagugagacgucgcgacc
cucgcaggagucguucuugacuuuuuggucgcuugauguuucucucuucc
cguuc
................................................<<
<<<<<<..<..<.<<<<.>>>>.>..>..>>>>>>>>.............
..............<<<<<<<<<<.<<<<<.>>>>><<<<<<<<<<<<.<
<......<<<<<<....>>>>>>...>>>>>>..>>>>>>>>..>>>>>>
>>>>.
    		 ? GO:0000243 ... Q06217 30879786
    10 6j6n:s
    (3.86)    		 BS01 >6j6n:L
    acgaaucucuuugccuuuuggcuuagaucaaguguaguaucuguucagug
uaacaacuaaugaccucagaggcucauauuuguuacaauacacauuuuuu
ggcacccaaaauaggacgggaagagacuuuuaaagugagacgucgcgacc
cucgcaggagucguucuugacuuuuuggucgcuugauguuucucucuucc
cguuc
................................................<<
<<<<<<..<..<.<<<<.>>>>.>..>..>>>>>>>>.............
..............<<<<<<<<<<.<<<<<.>>>>><<<<<<<<<<<<.<
<......<<<<<<....>>>>>>...>>>>>>..>>>>>>>>..>>>>>>
>>>>.
    		 ? GO:0000243 ... P40018 30879786
    11 6j6n:u
    (3.86)    		 BS01 >6j6n:L
    acgaaucucuuugccuuuuggcuuagaucaaguguaguaucuguucagug
uaacaacuaaugaccucagaggcucauauuuguuacaauacacauuuuuu
ggcacccaaaauaggacgggaagagacuuuuaaagugagacgucgcgacc
cucgcaggagucguucuugacuuuuuggucgcuugauguuucucucuucc
cguuc
................................................<<
<<<<<<..<..<.<<<<.>>>>.>..>..>>>>>>>>.............
..............<<<<<<<<<<.<<<<<.>>>>><<<<<<<<<<<<.<
<......<<<<<<....>>>>>>...>>>>>>..>>>>>>>>..>>>>>>
>>>>.
    		 ? GO:0000243 ... Q12330 30879786
    12 6j6n:v
    (3.86)    		 BS01 >6j6n:L
    acgaaucucuuugccuuuuggcuuagaucaaguguaguaucuguucagug
uaacaacuaaugaccucagaggcucauauuuguuacaauacacauuuuuu
ggcacccaaaauaggacgggaagagacuuuuaaagugagacgucgcgacc
cucgcaggagucguucuugacuuuuuggucgcuugauguuucucucuucc
cguuc
................................................<<
<<<<<<..<..<.<<<<.>>>>.>..>..>>>>>>>>.............
..............<<<<<<<<<<.<<<<<.>>>>><<<<<<<<<<<<.<
<......<<<<<<....>>>>>>...>>>>>>..>>>>>>>>..>>>>>>
>>>>.
    		 ? GO:0000349 ... Q04048 30879786
    13 6j6n:w
    (3.86)    		 BS01 >6j6n:L
    acgaaucucuuugccuuuuggcuuagaucaaguguaguaucuguucagug
uaacaacuaaugaccucagaggcucauauuuguuacaauacacauuuuuu
ggcacccaaaauaggacgggaagagacuuuuaaagugagacgucgcgacc
cucgcaggagucguucuugacuuuuuggucgcuugauguuucucucuucc
cguuc
................................................<<
<<<<<<..<..<.<<<<.>>>>.>..>..>>>>>>>>.............
..............<<<<<<<<<<.<<<<<.>>>>><<<<<<<<<<<<.<
<......<<<<<<....>>>>>>...>>>>>>..>>>>>>>>..>>>>>>
>>>>.
    		 ? GO:0000243 ... P54999 30879786
    14 6j6n:x
    (3.86)    		 BS01 >6j6n:L
    acgaaucucuuugccuuuuggcuuagaucaaguguaguaucuguucagug
uaacaacuaaugaccucagaggcucauauuuguuacaauacacauuuuuu
ggcacccaaaauaggacgggaagagacuuuuaaagugagacgucgcgacc
cucgcaggagucguucuugacuuuuuggucgcuugauguuucucucuucc
cguuc
................................................<<
<<<<<<..<..<.<<<<.>>>>.>..>..>>>>>>>>.............
..............<<<<<<<<<<.<<<<<.>>>>><<<<<<<<<<<<.<
<......<<<<<<....>>>>>>...>>>>>>..>>>>>>>>..>>>>>>
>>>>.
    		 ? GO:0000243 ... P40204 30879786
    15 6j6n:y
    (3.86)    		 BS01 >6j6n:L
    acgaaucucuuugccuuuuggcuuagaucaaguguaguaucuguucagug
uaacaacuaaugaccucagaggcucauauuuguuacaauacacauuuuuu
ggcacccaaaauaggacgggaagagacuuuuaaagugagacgucgcgacc
cucgcaggagucguucuugacuuuuuggucgcuugauguuucucucuucc
cguuc
................................................<<
<<<<<<..<..<.<<<<.>>>>.>..>..>>>>>>>>.............
..............<<<<<<<<<<.<<<<<.>>>>><<<<<<<<<<<<.<
<......<<<<<<....>>>>>>...>>>>>>..>>>>>>>>..>>>>>>
>>>>.
    		 ? GO:0000243 ... P43321 30879786
    16 6j6n:z
    (3.86)    		 BS01 >6j6n:L
    acgaaucucuuugccuuuuggcuuagaucaaguguaguaucuguucagug
uaacaacuaaugaccucagaggcucauauuuguuacaauacacauuuuuu
ggcacccaaaauaggacgggaagagacuuuuaaagugagacgucgcgacc
cucgcaggagucguucuugacuuuuuggucgcuugauguuucucucuucc
cguuc
................................................<<
<<<<<<..<..<.<<<<.>>>>.>..>..>>>>>>>>.............
..............<<<<<<<<<<.<<<<<.>>>>><<<<<<<<<<<<.<
<......<<<<<<....>>>>>>...>>>>>>..>>>>>>>>..>>>>>>
>>>>.
    		 ? GO:0000243 ... Q02260 30879786
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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