BioLiP

Download all results in tab-seperated text for 15 receptor-ligand interactions, whose format is explained at readme.txt.

Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.

Click Site # to view the binding site structure. Hover over Site # to view the binding residues.

The sequence is converted from residues with experimentally determined coordinates in the structure; residues not observed in the 3D structure are excluded.

Hover over EC number to view the full name of enzymatic activity.

Hover over GO terms to view all GO terms.

Hover over UniProt to view the protein name.

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acgaaucucuuugccuuuuggcuuagaucaaguguaguaucuguucuuuu
caguguaacaacuaaugaccucagaggcucaauuuguuacaauacacauu
uuuuggcacccaaaauaggacgggaagagacuuuuaaagugagacgucgc
gacccucgcaggagucguucuugacuuuuuggucgcuugauguuucucuc
uucccguuc
..................................................
...<<<<<<<<.....<.<<<<.>>>>.>....>>>>>>>>.........
..................<<<<<<<<<<.<<<<<.>>>>><<<<<<<<<<
<<.<<......<<<<<<....>>>>>>...>>>>>>..>>>>>>>>..>>
>>>>>>>>.
acgaaucucuuugccuuuuggcuuagaucaaguguaguaucuguucuuuu
caguguaacaacuaaugaccucagaggcucaauuuguuacaauacacauu
uuuuggcacccaaaauaggacgggaagagacuuuuaaagugagacgucgc
gacccucgcaggagucguucuugacuuuuuggucgcuugauguuucucuc
uucccguuc
..................................................
...<<<<<<<<.....<.<<<<.>>>>.>....>>>>>>>>.........
..................<<<<<<<<<<.<<<<<.>>>>><<<<<<<<<<
<<.<<......<<<<<<....>>>>>>...>>>>>>..>>>>>>>>..>>
>>>>>>>>.
acgaaucucuuugccuuuuggcuuagaucaaguguaguaucuguucuuuu
caguguaacaacuaaugaccucagaggcucaauuuguuacaauacacauu
uuuuggcacccaaaauaggacgggaagagacuuuuaaagugagacgucgc
gacccucgcaggagucguucuugacuuuuuggucgcuugauguuucucuc
uucccguuc
..................................................
...<<<<<<<<.....<.<<<<.>>>>.>....>>>>>>>>.........
..................<<<<<<<<<<.<<<<<.>>>>><<<<<<<<<<
<<.<<......<<<<<<....>>>>>>...>>>>>>..>>>>>>>>..>>
>>>>>>>>.
acgaaucucuuugccuuuuggcuuagaucaaguguaguaucuguucuuuu
caguguaacaacuaaugaccucagaggcucaauuuguuacaauacacauu
uuuuggcacccaaaauaggacgggaagagacuuuuaaagugagacgucgc
gacccucgcaggagucguucuugacuuuuuggucgcuugauguuucucuc
uucccguuc
..................................................
...<<<<<<<<.....<.<<<<.>>>>.>....>>>>>>>>.........
..................<<<<<<<<<<.<<<<<.>>>>><<<<<<<<<<
<<.<<......<<<<<<....>>>>>>...>>>>>>..>>>>>>>>..>>
>>>>>>>>.
acgaaucucuuugccuuuuggcuuagaucaaguguaguaucuguucuuuu
caguguaacaacuaaugaccucagaggcucaauuuguuacaauacacauu
uuuuggcacccaaaauaggacgggaagagacuuuuaaagugagacgucgc
gacccucgcaggagucguucuugacuuuuuggucgcuugauguuucucuc
uucccguuc
..................................................
...<<<<<<<<.....<.<<<<.>>>>.>....>>>>>>>>.........
..................<<<<<<<<<<.<<<<<.>>>>><<<<<<<<<<
<<.<<......<<<<<<....>>>>>>...>>>>>>..>>>>>>>>..>>
>>>>>>>>.
acgaaucucuuugccuuuuggcuuagaucaaguguaguaucuguucuuuu
caguguaacaacuaaugaccucagaggcucaauuuguuacaauacacauu
uuuuggcacccaaaauaggacgggaagagacuuuuaaagugagacgucgc
gacccucgcaggagucguucuugacuuuuuggucgcuugauguuucucuc
uucccguuc
..................................................
...<<<<<<<<.....<.<<<<.>>>>.>....>>>>>>>>.........
..................<<<<<<<<<<.<<<<<.>>>>><<<<<<<<<<
<<.<<......<<<<<<....>>>>>>...>>>>>>..>>>>>>>>..>>
>>>>>>>>.
acgaaucucuuugccuuuuggcuuagaucaaguguaguaucuguucuuuu
caguguaacaacuaaugaccucagaggcucaauuuguuacaauacacauu
uuuuggcacccaaaauaggacgggaagagacuuuuaaagugagacgucgc
gacccucgcaggagucguucuugacuuuuuggucgcuugauguuucucuc
uucccguuc
..................................................
...<<<<<<<<.....<.<<<<.>>>>.>....>>>>>>>>.........
..................<<<<<<<<<<.<<<<<.>>>>><<<<<<<<<<
<<.<<......<<<<<<....>>>>>>...>>>>>>..>>>>>>>>..>>
>>>>>>>>.
acgaaucucuuugccuuuuggcuuagaucaaguguaguaucuguucuuuu
caguguaacaacuaaugaccucagaggcucaauuuguuacaauacacauu
uuuuggcacccaaaauaggacgggaagagacuuuuaaagugagacgucgc
gacccucgcaggagucguucuugacuuuuuggucgcuugauguuucucuc
uucccguuc
..................................................
...<<<<<<<<.....<.<<<<.>>>>.>....>>>>>>>>.........
..................<<<<<<<<<<.<<<<<.>>>>><<<<<<<<<<
<<.<<......<<<<<<....>>>>>>...>>>>>>..>>>>>>>>..>>
>>>>>>>>.
acgaaucucuuugccuuuuggcuuagaucaaguguaguaucuguucuuuu
caguguaacaacuaaugaccucagaggcucaauuuguuacaauacacauu
uuuuggcacccaaaauaggacgggaagagacuuuuaaagugagacgucgc
gacccucgcaggagucguucuugacuuuuuggucgcuugauguuucucuc
uucccguuc
..................................................
...<<<<<<<<.....<.<<<<.>>>>.>....>>>>>>>>.........
..................<<<<<<<<<<.<<<<<.>>>>><<<<<<<<<<
<<.<<......<<<<<<....>>>>>>...>>>>>>..>>>>>>>>..>>
>>>>>>>>.
acgaaucucuuugccuuuuggcuuagaucaaguguaguaucuguucuuuu
caguguaacaacuaaugaccucagaggcucaauuuguuacaauacacauu
uuuuggcacccaaaauaggacgggaagagacuuuuaaagugagacgucgc
gacccucgcaggagucguucuugacuuuuuggucgcuugauguuucucuc
uucccguuc
..................................................
...<<<<<<<<.....<.<<<<.>>>>.>....>>>>>>>>.........
..................<<<<<<<<<<.<<<<<.>>>>><<<<<<<<<<
<<.<<......<<<<<<....>>>>>>...>>>>>>..>>>>>>>>..>>
>>>>>>>>.
acgaaucucuuugccuuuuggcuuagaucaaguguaguaucuguucuuuu
caguguaacaacuaaugaccucagaggcucaauuuguuacaauacacauu
uuuuggcacccaaaauaggacgggaagagacuuuuaaagugagacgucgc
gacccucgcaggagucguucuugacuuuuuggucgcuugauguuucucuc
uucccguuc
..................................................
...<<<<<<<<.....<.<<<<.>>>>.>....>>>>>>>>.........
..................<<<<<<<<<<.<<<<<.>>>>><<<<<<<<<<
<<.<<......<<<<<<....>>>>>>...>>>>>>..>>>>>>>>..>>
>>>>>>>>.
acgaaucucuuugccuuuuggcuuagaucaaguguaguaucuguucuuuu
caguguaacaacuaaugaccucagaggcucaauuuguuacaauacacauu
uuuuggcacccaaaauaggacgggaagagacuuuuaaagugagacgucgc
gacccucgcaggagucguucuugacuuuuuggucgcuugauguuucucuc
uucccguuc
..................................................
...<<<<<<<<.....<.<<<<.>>>>.>....>>>>>>>>.........
..................<<<<<<<<<<.<<<<<.>>>>><<<<<<<<<<
<<.<<......<<<<<<....>>>>>>...>>>>>>..>>>>>>>>..>>
>>>>>>>>.
acgaaucucuuugccuuuuggcuuagaucaaguguaguaucuguucuuuu
caguguaacaacuaaugaccucagaggcucaauuuguuacaauacacauu
uuuuggcacccaaaauaggacgggaagagacuuuuaaagugagacgucgc
gacccucgcaggagucguucuugacuuuuuggucgcuugauguuucucuc
uucccguuc
..................................................
...<<<<<<<<.....<.<<<<.>>>>.>....>>>>>>>>.........
..................<<<<<<<<<<.<<<<<.>>>>><<<<<<<<<<
<<.<<......<<<<<<....>>>>>>...>>>>>>..>>>>>>>>..>>
>>>>>>>>.
acgaaucucuuugccuuuuggcuuagaucaaguguaguaucuguucuuuu
caguguaacaacuaaugaccucagaggcucaauuuguuacaauacacauu
uuuuggcacccaaaauaggacgggaagagacuuuuaaagugagacgucgc
gacccucgcaggagucguucuugacuuuuuggucgcuugauguuucucuc
uucccguuc
..................................................
...<<<<<<<<.....<.<<<<.>>>>.>....>>>>>>>>.........
..................<<<<<<<<<<.<<<<<.>>>>><<<<<<<<<<
<<.<<......<<<<<<....>>>>>>...>>>>>>..>>>>>>>>..>>
>>>>>>>>.
acgaaucucuuugccuuuuggcuuagaucaaguguaguaucuguucuuuu
caguguaacaacuaaugaccucagaggcucaauuuguuacaauacacauu
uuuuggcacccaaaauaggacgggaagagacuuuuaaagugagacgucgc
gacccucgcaggagucguucuugacuuuuuggucgcuugauguuucucuc
uucccguuc
..................................................
...<<<<<<<<.....<.<<<<.>>>>.>....>>>>>>>>.........
..................<<<<<<<<<<.<<<<<.>>>>><<<<<<<<<<
<<.<<......<<<<<<....>>>>>>...>>>>>>..>>>>>>>>..>>
>>>>>>>>.

#	PDB (resolution)	Site #	RNA sequence	EC number	GO terms	UniProt	PubMed
1	6j6h:A (3.6)	BS05	>6j6h:L acgaaucucuuugccuuuuggcuuagaucaaguguaguaucuguucuuuu caguguaacaacuaaugaccucagaggcucaauuuguuacaauacacauu uuuuggcacccaaaauaggacgggaagagacuuuuaaagugagacgucgc gacccucgcaggagucguucuugacuuuuuggucgcuugauguuucucuc uucccguuc .................................................. ...<<<<<<<<.....<.<<<<.>>>>.>....>>>>>>>>......... ..................<<<<<<<<<<.<<<<<.>>>>><<<<<<<<<< <<.<<......<<<<<<....>>>>>>...>>>>>>..>>>>>>>>..>> >>>>>>>>.	?	GO:0000244 ...	P33334	30879786
2	6j6h:I (3.6)	BS02	>6j6h:L acgaaucucuuugccuuuuggcuuagaucaaguguaguaucuguucuuuu caguguaacaacuaaugaccucagaggcucaauuuguuacaauacacauu uuuuggcacccaaaauaggacgggaagagacuuuuaaagugagacgucgc gacccucgcaggagucguucuugacuuuuuggucgcuugauguuucucuc uucccguuc .................................................. ...<<<<<<<<.....<.<<<<.>>>>.>....>>>>>>>>......... ..................<<<<<<<<<<.<<<<<.>>>>><<<<<<<<<< <<.<<......<<<<<<....>>>>>>...>>>>>>..>>>>>>>>..>> >>>>>>>>.	?	GO:0000384 ...	P53277	30879786
3	6j6h:P (3.6)	BS02	>6j6h:L acgaaucucuuugccuuuuggcuuagaucaaguguaguaucuguucuuuu caguguaacaacuaaugaccucagaggcucaauuuguuacaauacacauu uuuuggcacccaaaauaggacgggaagagacuuuuaaagugagacgucgc gacccucgcaggagucguucuugacuuuuuggucgcuugauguuucucuc uucccguuc .................................................. ...<<<<<<<<.....<.<<<<.>>>>.>....>>>>>>>>......... ..................<<<<<<<<<<.<<<<<.>>>>><<<<<<<<<< <<.<<......<<<<<<....>>>>>>...>>>>>>..>>>>>>>>..>> >>>>>>>>.	?	GO:0000350 ...	P28004	30879786
4	6j6h:Q (3.6)	BS02	>6j6h:L acgaaucucuuugccuuuuggcuuagaucaaguguaguaucuguucuuuu caguguaacaacuaaugaccucagaggcucaauuuguuacaauacacauu uuuuggcacccaaaauaggacgggaagagacuuuuaaagugagacgucgc gacccucgcaggagucguucuugacuuuuuggucgcuugauguuucucuc uucccguuc .................................................. ...<<<<<<<<.....<.<<<<.>>>>.>....>>>>>>>>......... ..................<<<<<<<<<<.<<<<<.>>>>><<<<<<<<<< <<.<<......<<<<<<....>>>>>>...>>>>>>..>>>>>>>>..>> >>>>>>>>.	?	GO:0000398 ...	P38241	30879786
5	6j6h:S (3.6)	BS03	>6j6h:L acgaaucucuuugccuuuuggcuuagaucaaguguaguaucuguucuuuu caguguaacaacuaaugaccucagaggcucaauuuguuacaauacacauu uuuuggcacccaaaauaggacgggaagagacuuuuaaagugagacgucgc gacccucgcaggagucguucuugacuuuuuggucgcuugauguuucucuc uucccguuc .................................................. ...<<<<<<<<.....<.<<<<.>>>>.>....>>>>>>>>......... ..................<<<<<<<<<<.<<<<<.>>>>><<<<<<<<<< <<.<<......<<<<<<....>>>>>>...>>>>>>..>>>>>>>>..>> >>>>>>>>.	?	GO:0000398 ...	Q03772	30879786
6	6j6h:a (3.6)	BS01	>6j6h:L acgaaucucuuugccuuuuggcuuagaucaaguguaguaucuguucuuuu caguguaacaacuaaugaccucagaggcucaauuuguuacaauacacauu uuuuggcacccaaaauaggacgggaagagacuuuuaaagugagacgucgc gacccucgcaggagucguucuugacuuuuuggucgcuugauguuucucuc uucccguuc .................................................. ...<<<<<<<<.....<.<<<<.>>>>.>....>>>>>>>>......... ..................<<<<<<<<<<.<<<<<.>>>>><<<<<<<<<< <<.<<......<<<<<<....>>>>>>...>>>>>>..>>>>>>>>..>> >>>>>>>>.	?	GO:0000398 ...	P40567	30879786
7	6j6h:c (3.6)	BS03	>6j6h:L acgaaucucuuugccuuuuggcuuagaucaaguguaguaucuguucuuuu caguguaacaacuaaugaccucagaggcucaauuuguuacaauacacauu uuuuggcacccaaaauaggacgggaagagacuuuuaaagugagacgucgc gacccucgcaggagucguucuugacuuuuuggucgcuugauguuucucuc uucccguuc .................................................. ...<<<<<<<<.....<.<<<<.>>>>.>....>>>>>>>>......... ..................<<<<<<<<<<.<<<<<.>>>>><<<<<<<<<< <<.<<......<<<<<<....>>>>>>...>>>>>>..>>>>>>>>..>> >>>>>>>>.	?	GO:0000350 ...	Q03654	30879786
8	6j6h:e (3.6)	BS01	>6j6h:L acgaaucucuuugccuuuuggcuuagaucaaguguaguaucuguucuuuu caguguaacaacuaaugaccucagaggcucaauuuguuacaauacacauu uuuuggcacccaaaauaggacgggaagagacuuuuaaagugagacgucgc gacccucgcaggagucguucuugacuuuuuggucgcuugauguuucucuc uucccguuc .................................................. ...<<<<<<<<.....<.<<<<.>>>>.>....>>>>>>>>......... ..................<<<<<<<<<<.<<<<<.>>>>><<<<<<<<<< <<.<<......<<<<<<....>>>>>>...>>>>>>..>>>>>>>>..>> >>>>>>>>.	?	GO:0000243 ...	Q06217	30879786
9	6j6h:s (3.6)	BS01	>6j6h:L acgaaucucuuugccuuuuggcuuagaucaaguguaguaucuguucuuuu caguguaacaacuaaugaccucagaggcucaauuuguuacaauacacauu uuuuggcacccaaaauaggacgggaagagacuuuuaaagugagacgucgc gacccucgcaggagucguucuugacuuuuuggucgcuugauguuucucuc uucccguuc .................................................. ...<<<<<<<<.....<.<<<<.>>>>.>....>>>>>>>>......... ..................<<<<<<<<<<.<<<<<.>>>>><<<<<<<<<< <<.<<......<<<<<<....>>>>>>...>>>>>>..>>>>>>>>..>> >>>>>>>>.	?	GO:0000243 ...	P40018	30879786
10	6j6h:u (3.6)	BS01	>6j6h:L acgaaucucuuugccuuuuggcuuagaucaaguguaguaucuguucuuuu caguguaacaacuaaugaccucagaggcucaauuuguuacaauacacauu uuuuggcacccaaaauaggacgggaagagacuuuuaaagugagacgucgc gacccucgcaggagucguucuugacuuuuuggucgcuugauguuucucuc uucccguuc .................................................. ...<<<<<<<<.....<.<<<<.>>>>.>....>>>>>>>>......... ..................<<<<<<<<<<.<<<<<.>>>>><<<<<<<<<< <<.<<......<<<<<<....>>>>>>...>>>>>>..>>>>>>>>..>> >>>>>>>>.	?	GO:0000243 ...	Q12330	30879786
11	6j6h:v (3.6)	BS01	>6j6h:L acgaaucucuuugccuuuuggcuuagaucaaguguaguaucuguucuuuu caguguaacaacuaaugaccucagaggcucaauuuguuacaauacacauu uuuuggcacccaaaauaggacgggaagagacuuuuaaagugagacgucgc gacccucgcaggagucguucuugacuuuuuggucgcuugauguuucucuc uucccguuc .................................................. ...<<<<<<<<.....<.<<<<.>>>>.>....>>>>>>>>......... ..................<<<<<<<<<<.<<<<<.>>>>><<<<<<<<<< <<.<<......<<<<<<....>>>>>>...>>>>>>..>>>>>>>>..>> >>>>>>>>.	?	GO:0000349 ...	Q04048	30879786
12	6j6h:w (3.6)	BS01	>6j6h:L acgaaucucuuugccuuuuggcuuagaucaaguguaguaucuguucuuuu caguguaacaacuaaugaccucagaggcucaauuuguuacaauacacauu uuuuggcacccaaaauaggacgggaagagacuuuuaaagugagacgucgc gacccucgcaggagucguucuugacuuuuuggucgcuugauguuucucuc uucccguuc .................................................. ...<<<<<<<<.....<.<<<<.>>>>.>....>>>>>>>>......... ..................<<<<<<<<<<.<<<<<.>>>>><<<<<<<<<< <<.<<......<<<<<<....>>>>>>...>>>>>>..>>>>>>>>..>> >>>>>>>>.	?	GO:0000243 ...	P54999	30879786
13	6j6h:x (3.6)	BS01	>6j6h:L acgaaucucuuugccuuuuggcuuagaucaaguguaguaucuguucuuuu caguguaacaacuaaugaccucagaggcucaauuuguuacaauacacauu uuuuggcacccaaaauaggacgggaagagacuuuuaaagugagacgucgc gacccucgcaggagucguucuugacuuuuuggucgcuugauguuucucuc uucccguuc .................................................. ...<<<<<<<<.....<.<<<<.>>>>.>....>>>>>>>>......... ..................<<<<<<<<<<.<<<<<.>>>>><<<<<<<<<< <<.<<......<<<<<<....>>>>>>...>>>>>>..>>>>>>>>..>> >>>>>>>>.	?	GO:0000243 ...	P40204	30879786
14	6j6h:y (3.6)	BS01	>6j6h:L acgaaucucuuugccuuuuggcuuagaucaaguguaguaucuguucuuuu caguguaacaacuaaugaccucagaggcucaauuuguuacaauacacauu uuuuggcacccaaaauaggacgggaagagacuuuuaaagugagacgucgc gacccucgcaggagucguucuugacuuuuuggucgcuugauguuucucuc uucccguuc .................................................. ...<<<<<<<<.....<.<<<<.>>>>.>....>>>>>>>>......... ..................<<<<<<<<<<.<<<<<.>>>>><<<<<<<<<< <<.<<......<<<<<<....>>>>>>...>>>>>>..>>>>>>>>..>> >>>>>>>>.	?	GO:0000243 ...	P43321	30879786
15	6j6h:z (3.6)	BS01	>6j6h:L acgaaucucuuugccuuuuggcuuagaucaaguguaguaucuguucuuuu caguguaacaacuaaugaccucagaggcucaauuuguuacaauacacauu uuuuggcacccaaaauaggacgggaagagacuuuuaaagugagacgucgc gacccucgcaggagucguucuugacuuuuuggucgcuugauguuucucuc uucccguuc .................................................. ...<<<<<<<<.....<.<<<<.>>>>.>....>>>>>>>>......... ..................<<<<<<<<<<.<<<<<.>>>>><<<<<<<<<< <<.<<......<<<<<<....>>>>>>...>>>>>>..>>>>>>>>..>> >>>>>>>>.	?	GO:0000243 ...	Q02260	30879786