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BioLiP
Download all results in tab-seperated text for 1 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • The sequence is converted from residues with experimentally determined coordinates in the structure; residues not observed in the 3D structure are excluded.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (resolution)     		Site
    #     		Peptide
    sequence         		EC
    number     		GO
    terms     		UniProt PubMed Binding
    affinity
    1 1nrr:H
    (2.4)    		 BS01 >1nrr:L (identical to 1b7x:A, 1bb0:A, 1bcu:L, 1bmn:L, 3c27:A, 1ca8:A, 4ch8:E, 3dt0:L, 6eo8:L, 6eo9:L, 5ew1:L, 8kme:1, 3ldx:L, 1lhc:L, 1lhd:L, 1lhe:L, 1lhf:L, 1lhg:L, 1qbv:L, 2r2m:A, 1t4u:L, 1t4v:L, 1thr:L, 1tmt:L, 1tom:L, 3utu:L, 1w7g:L, 6z8x:L, 7zkn:A, 7zkn:C)
    ADCGLRPLFEKKSLEDKTERELLESY
    		 3.4.21.5 GO:0004252 ... P00734 8136362
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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