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BioLiP
Download all results in tab-seperated text for 1 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • The sequence is converted from residues with experimentally determined coordinates in the structure; residues not observed in the 3D structure are excluded.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (resolution)
    Site
    #
    RNA
    sequence
    EC
    number
    GO
    terms
    UniProt PubMed Binding
    affinity
    1 7mqe:I
    (3.69)
    BS01 >7mqe:J (identical to 4afy:C, 4afy:D, 7eh1:I, 7eh2:I, 7eh2:R, 6ij2:E, 6ij2:F, 6ij2:G, 6ij2:H, 4jzu:C, 4k4z:D, 4lq3:R, 7mpl:B, 7mpl:D, 7mpl:F, 7mpl:H, 7mpl:J, 7mpl:L, 7mpl:N, 7mpl:P, 7mpq:R, 7mpu:D, 7mqb:B, 7mqb:D, 7mqb:F, 7mqb:H, 7mqb:J, 7mqb:L, 7mqb:N, 7mqb:P, 7mqc:B, 7mqc:D, 7mqc:F, 7mqc:H, 7mqc:J, 7mqc:L, 7mqc:N, 7mqc:P, 7mqd:B, 7mqd:D, 7mqd:F, 7mqd:H, 7mqd:J, 7mqd:L, 7mqd:N, 7mqd:P, 7mqe:B, 7mqe:D, 7mqe:F, 7mqe:H, 7mqe:L, 7mqe:N, 7mqe:P, 7mqf:B, 7mqf:D, 7mqf:F, 7mqf:H, 7mqf:J, 7mqf:L, 7mqf:N, 7mqf:P, 7mqg:B, 7mqg:D, 7mqg:F, 7mqg:H, 7mqg:J, 7mqg:L, 7mqg:N, 7mqg:P, 7mqh:B, 7mqh:D, 7mqh:F, 7mqh:H, 7mqh:J, 7mqh:L, 7mqh:N, 7mqh:P, 7mqi:B, 7mqi:D, 7mqi:F, 7mqi:H, 7mqi:J, 7mqi:L, 7mqi:N, 7mqi:P, 6n6a:D, 6n6i:D, 6n6i:C, 6oy5:I, 7pvk:E, 7pvk:F, 7pvk:G, 7pvk:H, 3u2e:C, 3u2e:D, 7va3:C, 4wtj:P, 4wtk:P, 4wtl:P, 4x4t:I, 6ymw:C)
    gg
    ..
    ? GO:0003676 ... X5MEI1 34533457

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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