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BioLiP
Download all results in tab-seperated text for 1 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • The sequence is converted from residues with experimentally determined coordinates in the structure; residues not observed in the 3D structure are excluded.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (resolution)
    Site
    #
    Peptide
    sequence
    EC
    number
    GO
    terms
    UniProt PubMed Binding
    affinity
    1 9fjy:C
    (3.79)
    BS02 >9fjy:J (identical to 9fjm:H, 9fjm:I, 9fjm:K, 9fjm:J, 9fju:H, 9fju:I, 9fju:J, 9fjy:H, 9fjy:I, 8oi6:H, 8oi6:I, 8oi6:J, 7p1g:H, 7p1g:F, 7p1g:G, 7p1g:I, 7p1g:J, 8p94:a, 8p94:b, 8p94:c, 8p94:d, 8p94:h, 8p94:i, 8p94:j, 8p94:k, 8p94:l, 8p94:m, 7plt:H, 7plu:H, 7plu:I, 7plu:J, 7plv:H, 7plw:H, 7plx:H, 7pm5:H, 7pm6:H, 7pm6:I, 7pm6:J, 7pm7:H, 7pm8:H, 7pm9:H, 7pma:H, 7pmb:H, 7pmc:H, 7pmd:H, 7pme:H, 7pme:I, 7pme:J, 7pmf:H, 7pmg:H, 7pmh:H, 7pmi:H, 7pmj:H, 7pml:H, 8rtt:H, 8rtt:I, 8rtt:J, 8rty:H, 8rty:I, 8rty:J, 6t1y:F, 6t1y:G, 6t1y:H, 6t1y:I, 6t1y:J, 6t20:F, 6t20:G, 6t20:H, 6t20:I, 6t20:J, 6t25:F, 6t25:G, 6t25:H, 6t25:I, 6t25:J, 7tpt:a, 7tpt:b, 7tpt:c, 7tpt:d, 7tpt:f, 7tpt:g, 7tpt:h, 7tpt:i, 7tpt:j, 7tpt:k, 7tpt:l, 7tpt:m, 8v30:F, 8v30:G, 8v30:H, 8v30:I, 8v30:J)
    WLATCPA
    N/A N/A P60712 N/A

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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