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BioLiP
Download all results in tab-seperated text for 8 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • The sequence is converted from residues with experimentally determined coordinates in the structure; residues not observed in the 3D structure are excluded.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (resolution)     		Site
    #     		DNA
    sequence         		EC
    number     		GO
    terms     		UniProt PubMed Binding
    affinity
    1 8x7i:A
    (3.27)    		 BS02 >8x7i:J (identical to 7ccq:J, 7ccr:J, 7ccr:U, 6esf:J, 6fq5:J, 6fq6:J, 6fq8:J, 8grq:J, 8gui:I, 8guj:I, 8guk:I, 8hr1:J, 8ieg:J, 8iej:J, 8v4y:J, 8v6v:J, 8wg5:J, 7xd1:J)
    ctggagaatcccggtgccgaggccgctcaattggtcgtagacagctctag
caccgcttaaacgcacgtacgcgctgtcccccgcgttttaaccgccaagg
ggattactccctagtctccaggcacgtgtcagatatatacatcctgt
    		 N/A N/A Q71DI3 N/A
    2 8x7i:B
    (3.27)    		 BS02 >8x7i:J (identical to 7ccq:J, 7ccr:J, 7ccr:U, 6esf:J, 6fq5:J, 6fq6:J, 6fq8:J, 8grq:J, 8gui:I, 8guj:I, 8guk:I, 8hr1:J, 8ieg:J, 8iej:J, 8v4y:J, 8v6v:J, 8wg5:J, 7xd1:J)
    ctggagaatcccggtgccgaggccgctcaattggtcgtagacagctctag
caccgcttaaacgcacgtacgcgctgtcccccgcgttttaaccgccaagg
ggattactccctagtctccaggcacgtgtcagatatatacatcctgt
    		 N/A N/A P62805 N/A
    3 8x7i:C
    (3.27)    		 BS02 >8x7i:J (identical to 7ccq:J, 7ccr:J, 7ccr:U, 6esf:J, 6fq5:J, 6fq6:J, 6fq8:J, 8grq:J, 8gui:I, 8guj:I, 8guk:I, 8hr1:J, 8ieg:J, 8iej:J, 8v4y:J, 8v6v:J, 8wg5:J, 7xd1:J)
    ctggagaatcccggtgccgaggccgctcaattggtcgtagacagctctag
caccgcttaaacgcacgtacgcgctgtcccccgcgttttaaccgccaagg
ggattactccctagtctccaggcacgtgtcagatatatacatcctgt
    		 N/A N/A P04908 N/A
    4 8x7i:D
    (3.27)    		 BS02 >8x7i:J (identical to 7ccq:J, 7ccr:J, 7ccr:U, 6esf:J, 6fq5:J, 6fq6:J, 6fq8:J, 8grq:J, 8gui:I, 8guj:I, 8guk:I, 8hr1:J, 8ieg:J, 8iej:J, 8v4y:J, 8v6v:J, 8wg5:J, 7xd1:J)
    ctggagaatcccggtgccgaggccgctcaattggtcgtagacagctctag
caccgcttaaacgcacgtacgcgctgtcccccgcgttttaaccgccaagg
ggattactccctagtctccaggcacgtgtcagatatatacatcctgt
    		 N/A N/A O60814 N/A
    5 8x7i:E
    (3.27)    		 BS02 >8x7i:J (identical to 7ccq:J, 7ccr:J, 7ccr:U, 6esf:J, 6fq5:J, 6fq6:J, 6fq8:J, 8grq:J, 8gui:I, 8guj:I, 8guk:I, 8hr1:J, 8ieg:J, 8iej:J, 8v4y:J, 8v6v:J, 8wg5:J, 7xd1:J)
    ctggagaatcccggtgccgaggccgctcaattggtcgtagacagctctag
caccgcttaaacgcacgtacgcgctgtcccccgcgttttaaccgccaagg
ggattactccctagtctccaggcacgtgtcagatatatacatcctgt
    		 N/A N/A Q71DI3 N/A
    6 8x7i:F
    (3.27)    		 BS02 >8x7i:J (identical to 7ccq:J, 7ccr:J, 7ccr:U, 6esf:J, 6fq5:J, 6fq6:J, 6fq8:J, 8grq:J, 8gui:I, 8guj:I, 8guk:I, 8hr1:J, 8ieg:J, 8iej:J, 8v4y:J, 8v6v:J, 8wg5:J, 7xd1:J)
    ctggagaatcccggtgccgaggccgctcaattggtcgtagacagctctag
caccgcttaaacgcacgtacgcgctgtcccccgcgttttaaccgccaagg
ggattactccctagtctccaggcacgtgtcagatatatacatcctgt
    		 N/A N/A P62805 N/A
    7 8x7i:G
    (3.27)    		 BS02 >8x7i:J (identical to 7ccq:J, 7ccr:J, 7ccr:U, 6esf:J, 6fq5:J, 6fq6:J, 6fq8:J, 8grq:J, 8gui:I, 8guj:I, 8guk:I, 8hr1:J, 8ieg:J, 8iej:J, 8v4y:J, 8v6v:J, 8wg5:J, 7xd1:J)
    ctggagaatcccggtgccgaggccgctcaattggtcgtagacagctctag
caccgcttaaacgcacgtacgcgctgtcccccgcgttttaaccgccaagg
ggattactccctagtctccaggcacgtgtcagatatatacatcctgt
    		 N/A N/A P04908 N/A
    8 8x7i:H
    (3.27)    		 BS02 >8x7i:J (identical to 7ccq:J, 7ccr:J, 7ccr:U, 6esf:J, 6fq5:J, 6fq6:J, 6fq8:J, 8grq:J, 8gui:I, 8guj:I, 8guk:I, 8hr1:J, 8ieg:J, 8iej:J, 8v4y:J, 8v6v:J, 8wg5:J, 7xd1:J)
    ctggagaatcccggtgccgaggccgctcaattggtcgtagacagctctag
caccgcttaaacgcacgtacgcgctgtcccccgcgttttaaccgccaagg
ggattactccctagtctccaggcacgtgtcagatatatacatcctgt
    		 N/A N/A O60814 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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