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BioLiP
Download all results in tab-seperated text for 8 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • The sequence is converted from residues with experimentally determined coordinates in the structure; residues not observed in the 3D structure are excluded.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (resolution)     		Site
    #     		DNA
    sequence         		EC
    number     		GO
    terms     		UniProt PubMed Binding
    affinity
    1 8wg5:A
    (3.05)    		 BS02 >8wg5:J (identical to 7ccq:J, 7ccr:J, 7ccr:U, 6esf:J, 6fq5:J, 6fq6:J, 6fq8:J, 8grq:J, 8gui:I, 8guj:I, 8guk:I, 8hr1:J, 8ieg:J, 8iej:J, 8v4y:J, 8v6v:J, 8x7i:J, 7xd1:J)
    ctggagaatcccggtgccgaggccgctcaattggtcgtagacagctctag
caccgcttaaacgcacgtacgcgctgtcccccgcgttttaaccgccaagg
ggattactccctagtctccaggcacgtgtcagatatatacatcctgt
    		 ? GO:0000786 ... P68431 38918638
    2 8wg5:B
    (3.05)    		 BS02 >8wg5:J (identical to 7ccq:J, 7ccr:J, 7ccr:U, 6esf:J, 6fq5:J, 6fq6:J, 6fq8:J, 8grq:J, 8gui:I, 8guj:I, 8guk:I, 8hr1:J, 8ieg:J, 8iej:J, 8v4y:J, 8v6v:J, 8x7i:J, 7xd1:J)
    ctggagaatcccggtgccgaggccgctcaattggtcgtagacagctctag
caccgcttaaacgcacgtacgcgctgtcccccgcgttttaaccgccaagg
ggattactccctagtctccaggcacgtgtcagatatatacatcctgt
    		 ? GO:0003677 ... P62805 38918638
    3 8wg5:C
    (3.05)    		 BS02 >8wg5:J (identical to 7ccq:J, 7ccr:J, 7ccr:U, 6esf:J, 6fq5:J, 6fq6:J, 6fq8:J, 8grq:J, 8gui:I, 8guj:I, 8guk:I, 8hr1:J, 8ieg:J, 8iej:J, 8v4y:J, 8v6v:J, 8x7i:J, 7xd1:J)
    ctggagaatcccggtgccgaggccgctcaattggtcgtagacagctctag
caccgcttaaacgcacgtacgcgctgtcccccgcgttttaaccgccaagg
ggattactccctagtctccaggcacgtgtcagatatatacatcctgt
    		 ? GO:0000786 ... P04908 38918638
    4 8wg5:D
    (3.05)    		 BS02 >8wg5:J (identical to 7ccq:J, 7ccr:J, 7ccr:U, 6esf:J, 6fq5:J, 6fq6:J, 6fq8:J, 8grq:J, 8gui:I, 8guj:I, 8guk:I, 8hr1:J, 8ieg:J, 8iej:J, 8v4y:J, 8v6v:J, 8x7i:J, 7xd1:J)
    ctggagaatcccggtgccgaggccgctcaattggtcgtagacagctctag
caccgcttaaacgcacgtacgcgctgtcccccgcgttttaaccgccaagg
ggattactccctagtctccaggcacgtgtcagatatatacatcctgt
    		 ? GO:0000786 ... O60814 38918638
    5 8wg5:E
    (3.05)    		 BS02 >8wg5:J (identical to 7ccq:J, 7ccr:J, 7ccr:U, 6esf:J, 6fq5:J, 6fq6:J, 6fq8:J, 8grq:J, 8gui:I, 8guj:I, 8guk:I, 8hr1:J, 8ieg:J, 8iej:J, 8v4y:J, 8v6v:J, 8x7i:J, 7xd1:J)
    ctggagaatcccggtgccgaggccgctcaattggtcgtagacagctctag
caccgcttaaacgcacgtacgcgctgtcccccgcgttttaaccgccaagg
ggattactccctagtctccaggcacgtgtcagatatatacatcctgt
    		 ? GO:0000786 ... P68431 38918638
    6 8wg5:F
    (3.05)    		 BS02 >8wg5:J (identical to 7ccq:J, 7ccr:J, 7ccr:U, 6esf:J, 6fq5:J, 6fq6:J, 6fq8:J, 8grq:J, 8gui:I, 8guj:I, 8guk:I, 8hr1:J, 8ieg:J, 8iej:J, 8v4y:J, 8v6v:J, 8x7i:J, 7xd1:J)
    ctggagaatcccggtgccgaggccgctcaattggtcgtagacagctctag
caccgcttaaacgcacgtacgcgctgtcccccgcgttttaaccgccaagg
ggattactccctagtctccaggcacgtgtcagatatatacatcctgt
    		 ? GO:0003677 ... P62805 38918638
    7 8wg5:G
    (3.05)    		 BS02 >8wg5:J (identical to 7ccq:J, 7ccr:J, 7ccr:U, 6esf:J, 6fq5:J, 6fq6:J, 6fq8:J, 8grq:J, 8gui:I, 8guj:I, 8guk:I, 8hr1:J, 8ieg:J, 8iej:J, 8v4y:J, 8v6v:J, 8x7i:J, 7xd1:J)
    ctggagaatcccggtgccgaggccgctcaattggtcgtagacagctctag
caccgcttaaacgcacgtacgcgctgtcccccgcgttttaaccgccaagg
ggattactccctagtctccaggcacgtgtcagatatatacatcctgt
    		 ? GO:0000786 ... P04908 38918638
    8 8wg5:H
    (3.05)    		 BS02 >8wg5:J (identical to 7ccq:J, 7ccr:J, 7ccr:U, 6esf:J, 6fq5:J, 6fq6:J, 6fq8:J, 8grq:J, 8gui:I, 8guj:I, 8guk:I, 8hr1:J, 8ieg:J, 8iej:J, 8v4y:J, 8v6v:J, 8x7i:J, 7xd1:J)
    ctggagaatcccggtgccgaggccgctcaattggtcgtagacagctctag
caccgcttaaacgcacgtacgcgctgtcccccgcgttttaaccgccaagg
ggattactccctagtctccaggcacgtgtcagatatatacatcctgt
    		 ? GO:0000786 ... O60814 38918638
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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