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BioLiP
Download all results in tab-seperated text for 8 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • The sequence is converted from residues with experimentally determined coordinates in the structure; residues not observed in the 3D structure are excluded.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (resolution)     		Site
    #     		DNA
    sequence         		EC
    number     		GO
    terms     		UniProt PubMed Binding
    affinity
    1 8sn9:A
    (3.9)    		 BS02 >8sn9:J (identical to 6dzt:I, 8pc5:J, 8pc6:J, 8peo:J, 8pep:J, 6pwe:I, 6r1t:I, 6r1u:I, 6r25:I, 7scy:I, 7scz:I, 8smw:J, 8smx:J, 8smy:J, 8smz:J, 8sn0:J, 8sn1:J, 8sn2:J, 8sn3:J, 8sn4:J, 8sn5:J, 8sn6:J, 8sn7:J, 8sn8:J, 8sna:J, 8txv:J, 8txw:J, 8txx:J)
    atcggatgtatatatctgacacgtgcctggagactagggagtaatcccct
tggcggttaaaacgcgggggacagcgcgtacgtgcgtttaagcggtgcta
gagctgtctacgaccaattgagcggcctcggcaccgggattctcgat
    		 ? GO:0000786 ... P68431 38242129
    2 8sn9:B
    (3.9)    		 BS02 >8sn9:J (identical to 6dzt:I, 8pc5:J, 8pc6:J, 8peo:J, 8pep:J, 6pwe:I, 6r1t:I, 6r1u:I, 6r25:I, 7scy:I, 7scz:I, 8smw:J, 8smx:J, 8smy:J, 8smz:J, 8sn0:J, 8sn1:J, 8sn2:J, 8sn3:J, 8sn4:J, 8sn5:J, 8sn6:J, 8sn7:J, 8sn8:J, 8sna:J, 8txv:J, 8txw:J, 8txx:J)
    atcggatgtatatatctgacacgtgcctggagactagggagtaatcccct
tggcggttaaaacgcgggggacagcgcgtacgtgcgtttaagcggtgcta
gagctgtctacgaccaattgagcggcctcggcaccgggattctcgat
    		 ? GO:0000781 ... P62805 38242129
    3 8sn9:C
    (3.9)    		 BS02 >8sn9:J (identical to 6dzt:I, 8pc5:J, 8pc6:J, 8peo:J, 8pep:J, 6pwe:I, 6r1t:I, 6r1u:I, 6r25:I, 7scy:I, 7scz:I, 8smw:J, 8smx:J, 8smy:J, 8smz:J, 8sn0:J, 8sn1:J, 8sn2:J, 8sn3:J, 8sn4:J, 8sn5:J, 8sn6:J, 8sn7:J, 8sn8:J, 8sna:J, 8txv:J, 8txw:J, 8txx:J)
    atcggatgtatatatctgacacgtgcctggagactagggagtaatcccct
tggcggttaaaacgcgggggacagcgcgtacgtgcgtttaagcggtgcta
gagctgtctacgaccaattgagcggcctcggcaccgggattctcgat
    		 ? GO:0000786 ... P04908 38242129
    4 8sn9:D
    (3.9)    		 BS02 >8sn9:J (identical to 6dzt:I, 8pc5:J, 8pc6:J, 8peo:J, 8pep:J, 6pwe:I, 6r1t:I, 6r1u:I, 6r25:I, 7scy:I, 7scz:I, 8smw:J, 8smx:J, 8smy:J, 8smz:J, 8sn0:J, 8sn1:J, 8sn2:J, 8sn3:J, 8sn4:J, 8sn5:J, 8sn6:J, 8sn7:J, 8sn8:J, 8sna:J, 8txv:J, 8txw:J, 8txx:J)
    atcggatgtatatatctgacacgtgcctggagactagggagtaatcccct
tggcggttaaaacgcgggggacagcgcgtacgtgcgtttaagcggtgcta
gagctgtctacgaccaattgagcggcctcggcaccgggattctcgat
    		 ? GO:0000786 ... P06899 38242129
    5 8sn9:E
    (3.9)    		 BS02 >8sn9:J (identical to 6dzt:I, 8pc5:J, 8pc6:J, 8peo:J, 8pep:J, 6pwe:I, 6r1t:I, 6r1u:I, 6r25:I, 7scy:I, 7scz:I, 8smw:J, 8smx:J, 8smy:J, 8smz:J, 8sn0:J, 8sn1:J, 8sn2:J, 8sn3:J, 8sn4:J, 8sn5:J, 8sn6:J, 8sn7:J, 8sn8:J, 8sna:J, 8txv:J, 8txw:J, 8txx:J)
    atcggatgtatatatctgacacgtgcctggagactagggagtaatcccct
tggcggttaaaacgcgggggacagcgcgtacgtgcgtttaagcggtgcta
gagctgtctacgaccaattgagcggcctcggcaccgggattctcgat
    		 ? GO:0000786 ... P68431 38242129
    6 8sn9:F
    (3.9)    		 BS02 >8sn9:J (identical to 6dzt:I, 8pc5:J, 8pc6:J, 8peo:J, 8pep:J, 6pwe:I, 6r1t:I, 6r1u:I, 6r25:I, 7scy:I, 7scz:I, 8smw:J, 8smx:J, 8smy:J, 8smz:J, 8sn0:J, 8sn1:J, 8sn2:J, 8sn3:J, 8sn4:J, 8sn5:J, 8sn6:J, 8sn7:J, 8sn8:J, 8sna:J, 8txv:J, 8txw:J, 8txx:J)
    atcggatgtatatatctgacacgtgcctggagactagggagtaatcccct
tggcggttaaaacgcgggggacagcgcgtacgtgcgtttaagcggtgcta
gagctgtctacgaccaattgagcggcctcggcaccgggattctcgat
    		 ? GO:0000781 ... P62805 38242129
    7 8sn9:G
    (3.9)    		 BS02 >8sn9:J (identical to 6dzt:I, 8pc5:J, 8pc6:J, 8peo:J, 8pep:J, 6pwe:I, 6r1t:I, 6r1u:I, 6r25:I, 7scy:I, 7scz:I, 8smw:J, 8smx:J, 8smy:J, 8smz:J, 8sn0:J, 8sn1:J, 8sn2:J, 8sn3:J, 8sn4:J, 8sn5:J, 8sn6:J, 8sn7:J, 8sn8:J, 8sna:J, 8txv:J, 8txw:J, 8txx:J)
    atcggatgtatatatctgacacgtgcctggagactagggagtaatcccct
tggcggttaaaacgcgggggacagcgcgtacgtgcgtttaagcggtgcta
gagctgtctacgaccaattgagcggcctcggcaccgggattctcgat
    		 ? GO:0000786 ... P04908 38242129
    8 8sn9:H
    (3.9)    		 BS02 >8sn9:J (identical to 6dzt:I, 8pc5:J, 8pc6:J, 8peo:J, 8pep:J, 6pwe:I, 6r1t:I, 6r1u:I, 6r25:I, 7scy:I, 7scz:I, 8smw:J, 8smx:J, 8smy:J, 8smz:J, 8sn0:J, 8sn1:J, 8sn2:J, 8sn3:J, 8sn4:J, 8sn5:J, 8sn6:J, 8sn7:J, 8sn8:J, 8sna:J, 8txv:J, 8txw:J, 8txx:J)
    atcggatgtatatatctgacacgtgcctggagactagggagtaatcccct
tggcggttaaaacgcgggggacagcgcgtacgtgcgtttaagcggtgcta
gagctgtctacgaccaattgagcggcctcggcaccgggattctcgat
    		 ? GO:0000786 ... P06899 38242129
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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