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BioLiP
Download all results in tab-seperated text for 9 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • The sequence is converted from residues with experimentally determined coordinates in the structure; residues not observed in the 3D structure are excluded.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (resolution)     		Site
    #     		DNA
    sequence         		EC
    number     		GO
    terms     		UniProt PubMed Binding
    affinity
    1 6r25:A
    (4.61)    		 BS02 >6r25:J (identical to 6dzt:J, 7lya:I, 7lyb:I, 7lyc:I, 8pc5:I, 8pc6:I, 8peo:I, 8pep:I, 6pwe:J, 6r1t:J, 6r1u:J, 7scy:J, 7scz:J, 8smw:I, 8smx:I, 8smy:I, 8smz:I, 8sn0:I, 8sn1:I, 8sn2:I, 8sn3:I, 8sn4:I, 8sn5:I, 8sn6:I, 8sn7:I, 8sn8:I, 8sn9:I, 8sna:I, 8txv:I, 8txw:I, 8txx:I, 8u13:I, 8u14:I, 8upf:I)
    atcgagaatcccggtgccgaggccgctcaattggtcgtagacagctctag
caccgcttaaacgcacgtacgcgctgtcccccgcgttttaaccgccaagg
ggattactccctagtctccaggcacgtgtcagatatatacatccgat
    		 ? GO:0000786 ... P84233 30970244
    2 6r25:B
    (4.61)    		 BS02 >6r25:J (identical to 6dzt:J, 7lya:I, 7lyb:I, 7lyc:I, 8pc5:I, 8pc6:I, 8peo:I, 8pep:I, 6pwe:J, 6r1t:J, 6r1u:J, 7scy:J, 7scz:J, 8smw:I, 8smx:I, 8smy:I, 8smz:I, 8sn0:I, 8sn1:I, 8sn2:I, 8sn3:I, 8sn4:I, 8sn5:I, 8sn6:I, 8sn7:I, 8sn8:I, 8sn9:I, 8sna:I, 8txv:I, 8txw:I, 8txx:I, 8u13:I, 8u14:I, 8upf:I)
    atcgagaatcccggtgccgaggccgctcaattggtcgtagacagctctag
caccgcttaaacgcacgtacgcgctgtcccccgcgttttaaccgccaagg
ggattactccctagtctccaggcacgtgtcagatatatacatccgat
    		 ? GO:0000786 ... P62799 30970244
    3 6r25:C
    (4.61)    		 BS02 >6r25:J (identical to 6dzt:J, 7lya:I, 7lyb:I, 7lyc:I, 8pc5:I, 8pc6:I, 8peo:I, 8pep:I, 6pwe:J, 6r1t:J, 6r1u:J, 7scy:J, 7scz:J, 8smw:I, 8smx:I, 8smy:I, 8smz:I, 8sn0:I, 8sn1:I, 8sn2:I, 8sn3:I, 8sn4:I, 8sn5:I, 8sn6:I, 8sn7:I, 8sn8:I, 8sn9:I, 8sna:I, 8txv:I, 8txw:I, 8txx:I, 8u13:I, 8u14:I, 8upf:I)
    atcgagaatcccggtgccgaggccgctcaattggtcgtagacagctctag
caccgcttaaacgcacgtacgcgctgtcccccgcgttttaaccgccaagg
ggattactccctagtctccaggcacgtgtcagatatatacatccgat
    		 ? GO:0000786 ... P06897 30970244
    4 6r25:D
    (4.61)    		 BS02 >6r25:J (identical to 6dzt:J, 7lya:I, 7lyb:I, 7lyc:I, 8pc5:I, 8pc6:I, 8peo:I, 8pep:I, 6pwe:J, 6r1t:J, 6r1u:J, 7scy:J, 7scz:J, 8smw:I, 8smx:I, 8smy:I, 8smz:I, 8sn0:I, 8sn1:I, 8sn2:I, 8sn3:I, 8sn4:I, 8sn5:I, 8sn6:I, 8sn7:I, 8sn8:I, 8sn9:I, 8sna:I, 8txv:I, 8txw:I, 8txx:I, 8u13:I, 8u14:I, 8upf:I)
    atcgagaatcccggtgccgaggccgctcaattggtcgtagacagctctag
caccgcttaaacgcacgtacgcgctgtcccccgcgttttaaccgccaagg
ggattactccctagtctccaggcacgtgtcagatatatacatccgat
    		 ? GO:0000786 ... P02281 30970244
    5 6r25:E
    (4.61)    		 BS02 >6r25:J (identical to 6dzt:J, 7lya:I, 7lyb:I, 7lyc:I, 8pc5:I, 8pc6:I, 8peo:I, 8pep:I, 6pwe:J, 6r1t:J, 6r1u:J, 7scy:J, 7scz:J, 8smw:I, 8smx:I, 8smy:I, 8smz:I, 8sn0:I, 8sn1:I, 8sn2:I, 8sn3:I, 8sn4:I, 8sn5:I, 8sn6:I, 8sn7:I, 8sn8:I, 8sn9:I, 8sna:I, 8txv:I, 8txw:I, 8txx:I, 8u13:I, 8u14:I, 8upf:I)
    atcgagaatcccggtgccgaggccgctcaattggtcgtagacagctctag
caccgcttaaacgcacgtacgcgctgtcccccgcgttttaaccgccaagg
ggattactccctagtctccaggcacgtgtcagatatatacatccgat
    		 ? GO:0000786 ... P84233 30970244
    6 6r25:F
    (4.61)    		 BS02 >6r25:J (identical to 6dzt:J, 7lya:I, 7lyb:I, 7lyc:I, 8pc5:I, 8pc6:I, 8peo:I, 8pep:I, 6pwe:J, 6r1t:J, 6r1u:J, 7scy:J, 7scz:J, 8smw:I, 8smx:I, 8smy:I, 8smz:I, 8sn0:I, 8sn1:I, 8sn2:I, 8sn3:I, 8sn4:I, 8sn5:I, 8sn6:I, 8sn7:I, 8sn8:I, 8sn9:I, 8sna:I, 8txv:I, 8txw:I, 8txx:I, 8u13:I, 8u14:I, 8upf:I)
    atcgagaatcccggtgccgaggccgctcaattggtcgtagacagctctag
caccgcttaaacgcacgtacgcgctgtcccccgcgttttaaccgccaagg
ggattactccctagtctccaggcacgtgtcagatatatacatccgat
    		 ? GO:0000786 ... P62799 30970244
    7 6r25:G
    (4.61)    		 BS02 >6r25:J (identical to 6dzt:J, 7lya:I, 7lyb:I, 7lyc:I, 8pc5:I, 8pc6:I, 8peo:I, 8pep:I, 6pwe:J, 6r1t:J, 6r1u:J, 7scy:J, 7scz:J, 8smw:I, 8smx:I, 8smy:I, 8smz:I, 8sn0:I, 8sn1:I, 8sn2:I, 8sn3:I, 8sn4:I, 8sn5:I, 8sn6:I, 8sn7:I, 8sn8:I, 8sn9:I, 8sna:I, 8txv:I, 8txw:I, 8txx:I, 8u13:I, 8u14:I, 8upf:I)
    atcgagaatcccggtgccgaggccgctcaattggtcgtagacagctctag
caccgcttaaacgcacgtacgcgctgtcccccgcgttttaaccgccaagg
ggattactccctagtctccaggcacgtgtcagatatatacatccgat
    		 ? GO:0000786 ... P06897 30970244
    8 6r25:H
    (4.61)    		 BS02 >6r25:J (identical to 6dzt:J, 7lya:I, 7lyb:I, 7lyc:I, 8pc5:I, 8pc6:I, 8peo:I, 8pep:I, 6pwe:J, 6r1t:J, 6r1u:J, 7scy:J, 7scz:J, 8smw:I, 8smx:I, 8smy:I, 8smz:I, 8sn0:I, 8sn1:I, 8sn2:I, 8sn3:I, 8sn4:I, 8sn5:I, 8sn6:I, 8sn7:I, 8sn8:I, 8sn9:I, 8sna:I, 8txv:I, 8txw:I, 8txx:I, 8u13:I, 8u14:I, 8upf:I)
    atcgagaatcccggtgccgaggccgctcaattggtcgtagacagctctag
caccgcttaaacgcacgtacgcgctgtcccccgcgttttaaccgccaagg
ggattactccctagtctccaggcacgtgtcagatatatacatccgat
    		 ? GO:0000786 ... P02281 30970244
    9 6r25:K
    (4.61)    		 BS03 >6r25:J (identical to 6dzt:J, 7lya:I, 7lyb:I, 7lyc:I, 8pc5:I, 8pc6:I, 8peo:I, 8pep:I, 6pwe:J, 6r1t:J, 6r1u:J, 7scy:J, 7scz:J, 8smw:I, 8smx:I, 8smy:I, 8smz:I, 8sn0:I, 8sn1:I, 8sn2:I, 8sn3:I, 8sn4:I, 8sn5:I, 8sn6:I, 8sn7:I, 8sn8:I, 8sn9:I, 8sna:I, 8txv:I, 8txw:I, 8txx:I, 8u13:I, 8u14:I, 8upf:I)
    atcgagaatcccggtgccgaggccgctcaattggtcgtagacagctctag
caccgcttaaacgcacgtacgcgctgtcccccgcgttttaaccgccaagg
ggattactccctagtctccaggcacgtgtcagatatatacatccgat
    		 1.14.99.66 GO:0000786 ... Q8NB78 30970244
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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