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BioLiP
Download all results in tab-seperated text for 8 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • The sequence is converted from residues with experimentally determined coordinates in the structure; residues not observed in the 3D structure are excluded.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (resolution)     		Site
    #     		DNA
    sequence         		EC
    number     		GO
    terms     		UniProt PubMed Binding
    affinity
    1 5b0y:A
    (2.557)    		 BS02 >5b0y:J (identical to 3afa:I, 3afa:J, 1aoi:I, 1aoi:J, 3av1:I, 3av1:J, 3av2:I, 3av2:J, 3ayw:J, 3aze:I, 5b0y:I, 5b0z:I, 5b0z:J, 5b1m:I, 5b1m:J, 5b31:I, 5b31:J, 5b32:I, 5b32:J, 5b33:I, 5b33:J, 5b40:I, 5b40:J, 2cv5:I, 2cv5:J, 5gsu:I, 5gsu:J, 5gt0:I, 5gt0:J, 5gt3:I, 5gt3:J, 5gtc:I, 5gtc:J, 5gxq:I, 5gxq:J, 6jou:I, 6jou:J, 6jr0:I, 6jr0:J, 6jr1:I, 6jr1:J, 6kvd:I, 6kvd:J, 1kx3:I, 1kx3:J, 6kxv:I, 6kxv:J, 6v2k:J, 6v92:i, 6v92:j, 3w97:I, 3w97:J, 3w98:J, 3wa9:I, 3wa9:J, 3waa:I, 3waa:J, 3wtp:I, 3wtp:J, 3x1s:I, 3x1s:J, 3x1t:I, 3x1t:J, 3x1u:I, 3x1u:J, 3x1v:I, 3x1v:J, 5x7x:I, 5xm0:I, 5xm0:J, 5xm1:I, 5xm1:J, 5y0c:J, 5y0d:I, 5y0d:J, 5z23:I, 5z23:J, 5z30:I, 5z30:J, 4z5t:I, 4z5t:J, 5zbx:I, 5zbx:J)
    atcaatatccacctgcagattctaccaaaagtgtatttggaaactgctcc
atcaaaaggcatgttcagctgaattcagctgaacatgccttttgatggag
cagtttccaaatacacttttggtagaatctgcaggtggatattgat
    		 ? GO:0000786 ... Q71DI3 26694698
    2 5b0y:B
    (2.557)    		 BS02 >5b0y:J (identical to 3afa:I, 3afa:J, 1aoi:I, 1aoi:J, 3av1:I, 3av1:J, 3av2:I, 3av2:J, 3ayw:J, 3aze:I, 5b0y:I, 5b0z:I, 5b0z:J, 5b1m:I, 5b1m:J, 5b31:I, 5b31:J, 5b32:I, 5b32:J, 5b33:I, 5b33:J, 5b40:I, 5b40:J, 2cv5:I, 2cv5:J, 5gsu:I, 5gsu:J, 5gt0:I, 5gt0:J, 5gt3:I, 5gt3:J, 5gtc:I, 5gtc:J, 5gxq:I, 5gxq:J, 6jou:I, 6jou:J, 6jr0:I, 6jr0:J, 6jr1:I, 6jr1:J, 6kvd:I, 6kvd:J, 1kx3:I, 1kx3:J, 6kxv:I, 6kxv:J, 6v2k:J, 6v92:i, 6v92:j, 3w97:I, 3w97:J, 3w98:J, 3wa9:I, 3wa9:J, 3waa:I, 3waa:J, 3wtp:I, 3wtp:J, 3x1s:I, 3x1s:J, 3x1t:I, 3x1t:J, 3x1u:I, 3x1u:J, 3x1v:I, 3x1v:J, 5x7x:I, 5xm0:I, 5xm0:J, 5xm1:I, 5xm1:J, 5y0c:J, 5y0d:I, 5y0d:J, 5z23:I, 5z23:J, 5z30:I, 5z30:J, 4z5t:I, 4z5t:J, 5zbx:I, 5zbx:J)
    atcaatatccacctgcagattctaccaaaagtgtatttggaaactgctcc
atcaaaaggcatgttcagctgaattcagctgaacatgccttttgatggag
cagtttccaaatacacttttggtagaatctgcaggtggatattgat
    		 ? GO:0000781 ... P62805 26694698
    3 5b0y:C
    (2.557)    		 BS02 >5b0y:J (identical to 3afa:I, 3afa:J, 1aoi:I, 1aoi:J, 3av1:I, 3av1:J, 3av2:I, 3av2:J, 3ayw:J, 3aze:I, 5b0y:I, 5b0z:I, 5b0z:J, 5b1m:I, 5b1m:J, 5b31:I, 5b31:J, 5b32:I, 5b32:J, 5b33:I, 5b33:J, 5b40:I, 5b40:J, 2cv5:I, 2cv5:J, 5gsu:I, 5gsu:J, 5gt0:I, 5gt0:J, 5gt3:I, 5gt3:J, 5gtc:I, 5gtc:J, 5gxq:I, 5gxq:J, 6jou:I, 6jou:J, 6jr0:I, 6jr0:J, 6jr1:I, 6jr1:J, 6kvd:I, 6kvd:J, 1kx3:I, 1kx3:J, 6kxv:I, 6kxv:J, 6v2k:J, 6v92:i, 6v92:j, 3w97:I, 3w97:J, 3w98:J, 3wa9:I, 3wa9:J, 3waa:I, 3waa:J, 3wtp:I, 3wtp:J, 3x1s:I, 3x1s:J, 3x1t:I, 3x1t:J, 3x1u:I, 3x1u:J, 3x1v:I, 3x1v:J, 5x7x:I, 5xm0:I, 5xm0:J, 5xm1:I, 5xm1:J, 5y0c:J, 5y0d:I, 5y0d:J, 5z23:I, 5z23:J, 5z30:I, 5z30:J, 4z5t:I, 4z5t:J, 5zbx:I, 5zbx:J)
    atcaatatccacctgcagattctaccaaaagtgtatttggaaactgctcc
atcaaaaggcatgttcagctgaattcagctgaacatgccttttgatggag
cagtttccaaatacacttttggtagaatctgcaggtggatattgat
    		 ? GO:0000786 ... P04908 26694698
    4 5b0y:D
    (2.557)    		 BS02 >5b0y:J (identical to 3afa:I, 3afa:J, 1aoi:I, 1aoi:J, 3av1:I, 3av1:J, 3av2:I, 3av2:J, 3ayw:J, 3aze:I, 5b0y:I, 5b0z:I, 5b0z:J, 5b1m:I, 5b1m:J, 5b31:I, 5b31:J, 5b32:I, 5b32:J, 5b33:I, 5b33:J, 5b40:I, 5b40:J, 2cv5:I, 2cv5:J, 5gsu:I, 5gsu:J, 5gt0:I, 5gt0:J, 5gt3:I, 5gt3:J, 5gtc:I, 5gtc:J, 5gxq:I, 5gxq:J, 6jou:I, 6jou:J, 6jr0:I, 6jr0:J, 6jr1:I, 6jr1:J, 6kvd:I, 6kvd:J, 1kx3:I, 1kx3:J, 6kxv:I, 6kxv:J, 6v2k:J, 6v92:i, 6v92:j, 3w97:I, 3w97:J, 3w98:J, 3wa9:I, 3wa9:J, 3waa:I, 3waa:J, 3wtp:I, 3wtp:J, 3x1s:I, 3x1s:J, 3x1t:I, 3x1t:J, 3x1u:I, 3x1u:J, 3x1v:I, 3x1v:J, 5x7x:I, 5xm0:I, 5xm0:J, 5xm1:I, 5xm1:J, 5y0c:J, 5y0d:I, 5y0d:J, 5z23:I, 5z23:J, 5z30:I, 5z30:J, 4z5t:I, 4z5t:J, 5zbx:I, 5zbx:J)
    atcaatatccacctgcagattctaccaaaagtgtatttggaaactgctcc
atcaaaaggcatgttcagctgaattcagctgaacatgccttttgatggag
cagtttccaaatacacttttggtagaatctgcaggtggatattgat
    		 ? GO:0000786 ... P06899 26694698
    5 5b0y:E
    (2.557)    		 BS02 >5b0y:J (identical to 3afa:I, 3afa:J, 1aoi:I, 1aoi:J, 3av1:I, 3av1:J, 3av2:I, 3av2:J, 3ayw:J, 3aze:I, 5b0y:I, 5b0z:I, 5b0z:J, 5b1m:I, 5b1m:J, 5b31:I, 5b31:J, 5b32:I, 5b32:J, 5b33:I, 5b33:J, 5b40:I, 5b40:J, 2cv5:I, 2cv5:J, 5gsu:I, 5gsu:J, 5gt0:I, 5gt0:J, 5gt3:I, 5gt3:J, 5gtc:I, 5gtc:J, 5gxq:I, 5gxq:J, 6jou:I, 6jou:J, 6jr0:I, 6jr0:J, 6jr1:I, 6jr1:J, 6kvd:I, 6kvd:J, 1kx3:I, 1kx3:J, 6kxv:I, 6kxv:J, 6v2k:J, 6v92:i, 6v92:j, 3w97:I, 3w97:J, 3w98:J, 3wa9:I, 3wa9:J, 3waa:I, 3waa:J, 3wtp:I, 3wtp:J, 3x1s:I, 3x1s:J, 3x1t:I, 3x1t:J, 3x1u:I, 3x1u:J, 3x1v:I, 3x1v:J, 5x7x:I, 5xm0:I, 5xm0:J, 5xm1:I, 5xm1:J, 5y0c:J, 5y0d:I, 5y0d:J, 5z23:I, 5z23:J, 5z30:I, 5z30:J, 4z5t:I, 4z5t:J, 5zbx:I, 5zbx:J)
    atcaatatccacctgcagattctaccaaaagtgtatttggaaactgctcc
atcaaaaggcatgttcagctgaattcagctgaacatgccttttgatggag
cagtttccaaatacacttttggtagaatctgcaggtggatattgat
    		 ? GO:0000786 ... Q71DI3 26694698
    6 5b0y:F
    (2.557)    		 BS02 >5b0y:J (identical to 3afa:I, 3afa:J, 1aoi:I, 1aoi:J, 3av1:I, 3av1:J, 3av2:I, 3av2:J, 3ayw:J, 3aze:I, 5b0y:I, 5b0z:I, 5b0z:J, 5b1m:I, 5b1m:J, 5b31:I, 5b31:J, 5b32:I, 5b32:J, 5b33:I, 5b33:J, 5b40:I, 5b40:J, 2cv5:I, 2cv5:J, 5gsu:I, 5gsu:J, 5gt0:I, 5gt0:J, 5gt3:I, 5gt3:J, 5gtc:I, 5gtc:J, 5gxq:I, 5gxq:J, 6jou:I, 6jou:J, 6jr0:I, 6jr0:J, 6jr1:I, 6jr1:J, 6kvd:I, 6kvd:J, 1kx3:I, 1kx3:J, 6kxv:I, 6kxv:J, 6v2k:J, 6v92:i, 6v92:j, 3w97:I, 3w97:J, 3w98:J, 3wa9:I, 3wa9:J, 3waa:I, 3waa:J, 3wtp:I, 3wtp:J, 3x1s:I, 3x1s:J, 3x1t:I, 3x1t:J, 3x1u:I, 3x1u:J, 3x1v:I, 3x1v:J, 5x7x:I, 5xm0:I, 5xm0:J, 5xm1:I, 5xm1:J, 5y0c:J, 5y0d:I, 5y0d:J, 5z23:I, 5z23:J, 5z30:I, 5z30:J, 4z5t:I, 4z5t:J, 5zbx:I, 5zbx:J)
    atcaatatccacctgcagattctaccaaaagtgtatttggaaactgctcc
atcaaaaggcatgttcagctgaattcagctgaacatgccttttgatggag
cagtttccaaatacacttttggtagaatctgcaggtggatattgat
    		 ? GO:0000781 ... P62805 26694698
    7 5b0y:G
    (2.557)    		 BS02 >5b0y:J (identical to 3afa:I, 3afa:J, 1aoi:I, 1aoi:J, 3av1:I, 3av1:J, 3av2:I, 3av2:J, 3ayw:J, 3aze:I, 5b0y:I, 5b0z:I, 5b0z:J, 5b1m:I, 5b1m:J, 5b31:I, 5b31:J, 5b32:I, 5b32:J, 5b33:I, 5b33:J, 5b40:I, 5b40:J, 2cv5:I, 2cv5:J, 5gsu:I, 5gsu:J, 5gt0:I, 5gt0:J, 5gt3:I, 5gt3:J, 5gtc:I, 5gtc:J, 5gxq:I, 5gxq:J, 6jou:I, 6jou:J, 6jr0:I, 6jr0:J, 6jr1:I, 6jr1:J, 6kvd:I, 6kvd:J, 1kx3:I, 1kx3:J, 6kxv:I, 6kxv:J, 6v2k:J, 6v92:i, 6v92:j, 3w97:I, 3w97:J, 3w98:J, 3wa9:I, 3wa9:J, 3waa:I, 3waa:J, 3wtp:I, 3wtp:J, 3x1s:I, 3x1s:J, 3x1t:I, 3x1t:J, 3x1u:I, 3x1u:J, 3x1v:I, 3x1v:J, 5x7x:I, 5xm0:I, 5xm0:J, 5xm1:I, 5xm1:J, 5y0c:J, 5y0d:I, 5y0d:J, 5z23:I, 5z23:J, 5z30:I, 5z30:J, 4z5t:I, 4z5t:J, 5zbx:I, 5zbx:J)
    atcaatatccacctgcagattctaccaaaagtgtatttggaaactgctcc
atcaaaaggcatgttcagctgaattcagctgaacatgccttttgatggag
cagtttccaaatacacttttggtagaatctgcaggtggatattgat
    		 ? GO:0000786 ... P04908 26694698
    8 5b0y:H
    (2.557)    		 BS02 >5b0y:J (identical to 3afa:I, 3afa:J, 1aoi:I, 1aoi:J, 3av1:I, 3av1:J, 3av2:I, 3av2:J, 3ayw:J, 3aze:I, 5b0y:I, 5b0z:I, 5b0z:J, 5b1m:I, 5b1m:J, 5b31:I, 5b31:J, 5b32:I, 5b32:J, 5b33:I, 5b33:J, 5b40:I, 5b40:J, 2cv5:I, 2cv5:J, 5gsu:I, 5gsu:J, 5gt0:I, 5gt0:J, 5gt3:I, 5gt3:J, 5gtc:I, 5gtc:J, 5gxq:I, 5gxq:J, 6jou:I, 6jou:J, 6jr0:I, 6jr0:J, 6jr1:I, 6jr1:J, 6kvd:I, 6kvd:J, 1kx3:I, 1kx3:J, 6kxv:I, 6kxv:J, 6v2k:J, 6v92:i, 6v92:j, 3w97:I, 3w97:J, 3w98:J, 3wa9:I, 3wa9:J, 3waa:I, 3waa:J, 3wtp:I, 3wtp:J, 3x1s:I, 3x1s:J, 3x1t:I, 3x1t:J, 3x1u:I, 3x1u:J, 3x1v:I, 3x1v:J, 5x7x:I, 5xm0:I, 5xm0:J, 5xm1:I, 5xm1:J, 5y0c:J, 5y0d:I, 5y0d:J, 5z23:I, 5z23:J, 5z30:I, 5z30:J, 4z5t:I, 4z5t:J, 5zbx:I, 5zbx:J)
    atcaatatccacctgcagattctaccaaaagtgtatttggaaactgctcc
atcaaaaggcatgttcagctgaattcagctgaacatgccttttgatggag
cagtttccaaatacacttttggtagaatctgcaggtggatattgat
    		 ? GO:0000786 ... P06899 26694698
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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