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BioLiP
Download all results in tab-seperated text for 8 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • The sequence is converted from residues with experimentally determined coordinates in the structure; residues not observed in the 3D structure are excluded.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (resolution)     		Site
    #     		DNA
    sequence         		EC
    number     		GO
    terms     		UniProt PubMed Binding
    affinity
    1 3mgr:A
    (2.3)    		 BS02 >3mgr:J (identical to 5av5:J, 5av6:J, 5av8:J, 5av9:J, 5avb:J, 5avc:J, 3b6f:J, 3b6g:J, 8eue:J, 8euj:J, 1kx5:J, 3lja:J, 3mgp:J, 3mgq:J, 3mgs:J, 5omx:J, 2pyo:J, 8w9d:j, 8w9e:j, 8w9f:j, 4xzq:J, 4ys3:J, 4z66:J)
    atcaatatccacctgcagatactaccaaaagtgtatttggaaactgctcc
atcaaaaggcatgttcagctggattccagctgaacatgccttttgatgga
gcagtttccaaatacacttttggtagtatctgcaggtggatattgat
    		 ? GO:0000786 ... P84233 20494975
    2 3mgr:B
    (2.3)    		 BS02 >3mgr:J (identical to 5av5:J, 5av6:J, 5av8:J, 5av9:J, 5avb:J, 5avc:J, 3b6f:J, 3b6g:J, 8eue:J, 8euj:J, 1kx5:J, 3lja:J, 3mgp:J, 3mgq:J, 3mgs:J, 5omx:J, 2pyo:J, 8w9d:j, 8w9e:j, 8w9f:j, 4xzq:J, 4ys3:J, 4z66:J)
    atcaatatccacctgcagatactaccaaaagtgtatttggaaactgctcc
atcaaaaggcatgttcagctggattccagctgaacatgccttttgatgga
gcagtttccaaatacacttttggtagtatctgcaggtggatattgat
    		 ? GO:0000786 ... P62799 20494975
    3 3mgr:C
    (2.3)    		 BS02 >3mgr:J (identical to 5av5:J, 5av6:J, 5av8:J, 5av9:J, 5avb:J, 5avc:J, 3b6f:J, 3b6g:J, 8eue:J, 8euj:J, 1kx5:J, 3lja:J, 3mgp:J, 3mgq:J, 3mgs:J, 5omx:J, 2pyo:J, 8w9d:j, 8w9e:j, 8w9f:j, 4xzq:J, 4ys3:J, 4z66:J)
    atcaatatccacctgcagatactaccaaaagtgtatttggaaactgctcc
atcaaaaggcatgttcagctggattccagctgaacatgccttttgatgga
gcagtttccaaatacacttttggtagtatctgcaggtggatattgat
    		 ? GO:0000786 ... Q6AZJ8 20494975
    4 3mgr:D
    (2.3)    		 BS02 >3mgr:J (identical to 5av5:J, 5av6:J, 5av8:J, 5av9:J, 5avb:J, 5avc:J, 3b6f:J, 3b6g:J, 8eue:J, 8euj:J, 1kx5:J, 3lja:J, 3mgp:J, 3mgq:J, 3mgs:J, 5omx:J, 2pyo:J, 8w9d:j, 8w9e:j, 8w9f:j, 4xzq:J, 4ys3:J, 4z66:J)
    atcaatatccacctgcagatactaccaaaagtgtatttggaaactgctcc
atcaaaaggcatgttcagctggattccagctgaacatgccttttgatgga
gcagtttccaaatacacttttggtagtatctgcaggtggatattgat
    		 ? GO:0000786 ... P02281 20494975
    5 3mgr:E
    (2.3)    		 BS02 >3mgr:J (identical to 5av5:J, 5av6:J, 5av8:J, 5av9:J, 5avb:J, 5avc:J, 3b6f:J, 3b6g:J, 8eue:J, 8euj:J, 1kx5:J, 3lja:J, 3mgp:J, 3mgq:J, 3mgs:J, 5omx:J, 2pyo:J, 8w9d:j, 8w9e:j, 8w9f:j, 4xzq:J, 4ys3:J, 4z66:J)
    atcaatatccacctgcagatactaccaaaagtgtatttggaaactgctcc
atcaaaaggcatgttcagctggattccagctgaacatgccttttgatgga
gcagtttccaaatacacttttggtagtatctgcaggtggatattgat
    		 ? GO:0000786 ... P84233 20494975
    6 3mgr:F
    (2.3)    		 BS02 >3mgr:J (identical to 5av5:J, 5av6:J, 5av8:J, 5av9:J, 5avb:J, 5avc:J, 3b6f:J, 3b6g:J, 8eue:J, 8euj:J, 1kx5:J, 3lja:J, 3mgp:J, 3mgq:J, 3mgs:J, 5omx:J, 2pyo:J, 8w9d:j, 8w9e:j, 8w9f:j, 4xzq:J, 4ys3:J, 4z66:J)
    atcaatatccacctgcagatactaccaaaagtgtatttggaaactgctcc
atcaaaaggcatgttcagctggattccagctgaacatgccttttgatgga
gcagtttccaaatacacttttggtagtatctgcaggtggatattgat
    		 ? GO:0000786 ... P62799 20494975
    7 3mgr:G
    (2.3)    		 BS02 >3mgr:J (identical to 5av5:J, 5av6:J, 5av8:J, 5av9:J, 5avb:J, 5avc:J, 3b6f:J, 3b6g:J, 8eue:J, 8euj:J, 1kx5:J, 3lja:J, 3mgp:J, 3mgq:J, 3mgs:J, 5omx:J, 2pyo:J, 8w9d:j, 8w9e:j, 8w9f:j, 4xzq:J, 4ys3:J, 4z66:J)
    atcaatatccacctgcagatactaccaaaagtgtatttggaaactgctcc
atcaaaaggcatgttcagctggattccagctgaacatgccttttgatgga
gcagtttccaaatacacttttggtagtatctgcaggtggatattgat
    		 ? GO:0000786 ... Q6AZJ8 20494975
    8 3mgr:H
    (2.3)    		 BS02 >3mgr:J (identical to 5av5:J, 5av6:J, 5av8:J, 5av9:J, 5avb:J, 5avc:J, 3b6f:J, 3b6g:J, 8eue:J, 8euj:J, 1kx5:J, 3lja:J, 3mgp:J, 3mgq:J, 3mgs:J, 5omx:J, 2pyo:J, 8w9d:j, 8w9e:j, 8w9f:j, 4xzq:J, 4ys3:J, 4z66:J)
    atcaatatccacctgcagatactaccaaaagtgtatttggaaactgctcc
atcaaaaggcatgttcagctggattccagctgaacatgccttttgatgga
gcagtttccaaatacacttttggtagtatctgcaggtggatattgat
    		 ? GO:0000786 ... P02281 20494975
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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